Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004628.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq19028 251 1e-63 >seq19028 Length=31091 Score = 251 bits (278), Expect = 1e-63 Identities = 601/900 (67%), Gaps = 27/900 (3%) Strand=Plus/Plus Query 1600 TGTGAGGGTGACGAAGGTCGCATTCTTCAAAGCCCAATTTTTGAGTGCGCTATTTTTCTC 1659 ||||| |||| ||| ||||| | ||||| ||||||||| | | ||||||| || Sbjct 13776 TGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTC 13835 Query 1660 TTCGTCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGG 1719 || || | ||||||||||||||||||| | || || |||||||| | |||||| | || Sbjct 13836 CTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGG 13895 Query 1720 AATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAGTA-TTTGATTG-CCAGTCCCTT 1777 || ||||| || || | || ||| | |||||||| || ||| | | ||| | ||| Sbjct 13896 TATCCCACCCTTTATCTTTACAGGCCTTCCGTATTT--TACCTTGCTGGACCAATTGCTT 13953 Query 1778 TGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACG 1837 ||||||||||| || || |||||||||||||| || || |||||||||| |||||||| | Sbjct 13954 TGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATG 14013 Query 1838 TTGTACCAGGCGTCATTACTGTAGACCTTTGGGCTAAGGTCGAGATGTCCACACAAATAG 1897 || |||||||| | ||| || | || | | || | ||| || || | || Sbjct 14014 TTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAA 14073 Query 1898 TTGTGTGGACCCAATGACCTGGCCCATATCGTCTTCCCCGTCCTACTCTCACCCTCTATG 1957 || ||||| || || || || ||||| |||||||| || ||| ||||||||| ||| Sbjct 14074 TTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATG 14133 Query 1958 ACAATACTTATGGGTC-TTAAAGGCCGCGCAGCGGCACCGAGAACATTCTCGGCAGCCCA 2016 |||||||| |||||| |||| ||||||||||||||| | |||||| || || ||||| Sbjct 14134 ACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCA 14193 Query 2017 CTCCTCAAGTTCCTCGGGAACTTGATCAAAAGANNNNNNNNNNNNAGGAGAAACATAAAC 2076 ||||| | |||| || ||| | |||| ||||||| Sbjct 14194 GCACTCAATTGTTGAAGGAA---GAACAACTAA-----------AAGGACTAACATAAGG 14239 Query 2077 CTCCAAGGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAAC 2136 || || || | || || | |||||| || | | || ||||||| |||| ||| Sbjct 14240 TTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG--AAAT 14297 Query 2137 ATAATCTTTG--GGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCCTGAA 2194 | || ||||| || ||| || || | |||| || || | || | | Sbjct 14298 AGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCA 14357 Query 2195 TTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCA 2254 | | || || ||| || | || || | | || ||||||||||||| |||| ||| Sbjct 14358 CTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCA 14417 Query 2255 TCGATTTGGAAAACTCCAAAGTCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACA 2314 |||||||| ||| || |||| || | || | ||||||| | | || || ||| Sbjct 14418 TCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACA 14477 Query 2315 TCTGAAGAGCTTTTAGCTCTCTGAATGTTCGGATGGAAATTTGCTGACCGGGTT-GGGGA 2373 |||||||| |||||| || | ||| || ||| || || || | || || Sbjct 14478 TCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTGCTAGTATTAGGATG 14536 Query 2374 AATAAGGTCGAAGAATCTGTTGTTTGTGCATTGGTATTTTCCCTCGAATTGGATGAGCAC 2433 || | |||||| ||| |||| | |||| || || |||||||| || || | Sbjct 14537 GATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGC 14596 Query 2434 GTGTAGATGAGGTTCCCCATTCTCGTGCAATTCTCGACAAACCCTAATAAATAATTTATT 2493 || |||| |||||||| || ||| |||| |||| || ||| ||| | |||||| Sbjct 14597 ATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCTA--AAACAGTTTATT 14654 Score = 152 bits (168), Expect = 9e-34 Identities = 250/360 (69%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 965 GAATCATACTGAGAATGCATTGATGTTGTACATGGCGTGTACTCACGCCTCTAATCCTGT 1024 || ||||||||| ||||||||| ||||| || | ||||| || ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1025 GTATGCTACGTTACAGATACGGATCTATTTCTATGATTCAGTATCGAATTAATAAAGATT 1084 ||| ||| | | ||| | ||||| ||||| ||||| |||||||||| ||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1085 GAATTTTATTGAATATGATTGTTGTACATATACAATGTTATGTAATACATTCCATAATAC 1144 |||||||||| || ||| |||||| || | | | | |||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1145 ATGGTCGACAGCTCTAATTACATTGTTTATACTAATTACAGCAAAATTATTTAAAAACTG 1204 || ||| ||||||||||| | |||||| |||||||| ||| | || | |||||| | Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1205 CAACACTTGGGTCTTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCA 1264 || || | |||||||| ||||||||| ||| |||| |||| |||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1265 GATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAA 1324 ||| |||| | || ||| |||||| | || | |||||||||||||| ||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700867424960