Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004640.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq19028 230 4e-57 >seq19028 Length=31091 Score = 230 bits (254), Expect = 4e-57 Identities = 345/484 (71%), Gaps = 6/484 (1%) Strand=Plus/Plus Query 2111 ATTCTATCTAAATTACTACGTAAATTATGATATTGAAAAATAAAATCTCTAGGGAGTTTC 2170 |||| |||||| || | || ||||||||||||||| | ||| | | || | ||| Sbjct 14259 ATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTT 14318 Query 2171 TCCCTAATTATTTGTAATGCTGCTTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGCTGCA 2230 || ||||| || | ||| ||||| || || |||| || ||||| | | || Sbjct 14319 TCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACA 14378 Query 2231 TCATTAGCTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAG 2290 ||||| | ||| || ||||||||||||||||| ||| |||| ||||||| | |||||| Sbjct 14379 TCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAG 14438 Query 2291 TCGATGTAATCACCGTCTTTCTCGATGTAGGACTTGACATCTGATGATGATTTAGCTCCC 2350 ||| ||||||||| ||||||| ||||||| ||| |||||||| ||||||||||| Sbjct 14439 TCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGAT 14498 Query 2351 TGGAAATTTGGATGGAAT-TGGTTGGAGCTGTTGGGGTGTTGCAGGTCGAAATGTCTGGG 2409 ||||| ||||| ||| || |||| || | || || || | ||||| ||||| || Sbjct 14499 TGGAAGTTTGGGTGGTATGTGGTGCTAG-TATTAGGATGGATGATATCGAAGTGTCTAGG 14557 Query 2410 GTTTTTAAATTGGGCTTTACCCTTGAACTGGATGAGAGCATGGAGGTGCAAAGACCCATC 2469 |||| ||||||| || || || | ||| || || || |||||| || || |||||| Sbjct 14558 GTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATC 14617 Query 2470 TTGGTGTTCTTCTTGACTAACTCTGATAAACAATTTATCAGATGGGCAGTTTATTGCCTT 2529 ||||||| |||||||| ||||| ||||| ||||| || || || | || Sbjct 14618 CTGGTGTTTTTCTTGACAGACTCT--AAAACAGTTTATTTGAAGGACAAGAAACCTGTTT 14675 Query 2530 TAATAGTTC-AAGAGCTGTTTCTTTAGAGAGAGAACATTTGGGATAAGTAAGAAAGACAT 2588 || | || |||| || ||||||| |||| |||||| ||| | |||||||| | | Sbjct 14676 CAAGTGCTCTAAGATTTG-ATCTTTAGGAAGAGGACATTTTGGAAATGTAAGAAATATGT 14734 Query 2589 TTTT 2592 |||| Sbjct 14735 TTTT 14738 Score = 208 bits (230), Expect = 1e-50 Identities = 242/325 (74%), Gaps = 1/325 (0%) Strand=Plus/Plus Query 1709 ccTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTAT 1768 || |||||||| | |||||| || || || ||||| || || | || ||| |||||||| Sbjct 13870 CCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTAT 13929 Query 1769 TTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAT 1828 || ||||| ||| | | ||||||||||| || || |||||||||||||| || Sbjct 13930 TTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAA 13989 Query 1829 TGGGGATTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTTTGGGCTC 1888 || |||| ||||| |||||||| ||||||||| ||| | || || | ||| || Sbjct 13990 TGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTC 14049 Query 1889 AAGTCCAAATGACCACACAGATAATTATGTGGACCTAAAGACCGTGCCCAAACTGTTTTA 1948 || || |||||||| || || ||||||||||| |||||||| | |||||| |||| || Sbjct 14050 AAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTC 14109 Query 1949 CCTATCCTACTTGGGCCTTCTATTACAATACTAATGGG-CCTATCTGGCCGCGCAGCGGA 2007 ||| | ||| || || || |||||||| |||| | | |||||||||||||| Sbjct 14110 CCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGC 14169 Query 2008 ATCCATGACATTTTCAGCGGCCCAG 2032 |||| | ||||||||||| |||||| Sbjct 14170 ATCCCTAACATTTTCAGCTGCCCAG 14194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8758353950410