Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004641.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq19028 194 3e-46 >seq19028 Length=31091 Score = 194 bits (214), Expect = 3e-46 Identities = 276/385 (72%), Gaps = 5/385 (1%) Strand=Plus/Plus Query 959 GAATCATACTGAAAATGCTTTGTTATTGTATATGGCTTGTACACATGCCAGTAATCCAGT 1018 || ||||||||||||||| ||||| |||||| || || ||||| |||||| || Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1019 GTATGCTAC-ATTAAAAATCAGAGTGTATTTCTACGATTCAGTACAAAATTAATAAAGCT 1077 ||| ||| || | || | ||| ||||| || || ||| ||||||||||| | Sbjct 13137 ATATTGTACTATGAGAACACGCAGT-TATTTTTATGAGAGTGTATCAAATTAATAAATAT 13195 Query 1078 TGAATTTTATATCATGAGATGATTGTACATACTCTGTTTTCTCTAATACATTATACAATA 1137 |||||||||| |||||| || |||||| | |||||| ||| | |||||| | |||| Sbjct 13196 TGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1138 CATGATCAACTGCCCTAATTACATTGTTAATTGAAATTACACCCAAATTATCTAAATACT 1197 ||| || || || ||||| | ||||||||| ||| ||||| || |||||| | | Sbjct 13256 CATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1198 TCAACACTTGTGTCTTAAATACCCTCAAGAAATGCGAAGTCTGAGGATGTAAGTGAGTCC 1257 ||| || | |||||||| || |||||| | ||| ||||| |||| |||||| Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1258 AAATCTTGAAACAGAGGAAGCACTTGTGTATCTCCAGTTGATTCCTGAGGTTGTGGTTGA 1317 |||||||| |||||| ||||| | | ||||| ||||| ||||||||||||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1318 ATTGTATTTGTATAGTTATTATGTC 1342 || | |||||||| |||||||| Sbjct 13436 ATCGAATTTGTATTTCGATTATGTC 13460 Score = 181 bits (200), Expect = 2e-42 Identities = 248/344 (72%), Gaps = 7/344 (2%) Strand=Plus/Plus Query 1682 GACGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGT 1741 || || || || |||||||| | ||||||||| || || ||||| || || | | || Sbjct 13861 GAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGC 13920 Query 1742 TTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTAAAGTGC 1801 | ||||| || ||||| ||| | || ||||||||||| || || ||||||||| Sbjct 13921 CTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGC 13980 Query 1802 TTTAGGTAGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAATC 1861 ||||| || || ||||| |||| |||||||| ||| |||||||| | || ||||| Sbjct 13981 TTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATT 14040 Query 1862 TTGGGGCTTAAGTCAAGATGGCCGCAAAGGTAATTATGACGTGGACTAAGAGATCTGGCC 1921 || | || || | ||| ||||| |||||||||| |||| | | |||||| ||| Sbjct 14041 TTATTATTCAAATCTAAATGACCGCATAGGTAATTAT---GTGGTCCTAAAGATCTTGCC 14097 Query 1922 CACATAGTTTTCCCTGTCCTGCTATCACCCTCTATCACAATACTCATGGG-CCTCCATGG 1980 ||| || |||||||| || |||||||| || ||||||||| |||| | | |||| Sbjct 14098 CACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGG 14157 Query 1981 CCGCGCA---GAATCCCTGACGTTCTCGGCAGCCCATTCCTCAA 2021 ||||||| | |||||| || || || || ||||| ||||| Sbjct 14158 CCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA 14201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8720060514868