Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004645.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq19028 131 3e-27 >seq19028 Length=31091 Score = 131 bits (144), Expect = 3e-27 Identities = 240/346 (69%), Gaps = 13/346 (4%) Strand=Plus/Plus Query 1531 TCCAGGAAATCTTTATAGCTGGCCCCCTCGCCTGGATTGCACAGCACGATTGACGGGATC 1590 || ||||| ||||||||||||| || |||||||||| | ||||| ||| ||| Sbjct 13840 TCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATC 13899 Query 1591 CCACCTTTAATTTGAACCGGCTTTCCATA-TTTAC--AGTTGGATTGCCAGTCTCTCTGG 1647 ||||| || || | || ||| |||| || ||||| | |||| ||| | || ||| Sbjct 13900 CCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGA---CCAATTGCTTTGG 13956 Query 1648 GCCCCAATCAATTCTTTCCAATGCTTTAGCTTTAGGTATTGCGGAGCGACGTCATCGATG 1707 ||||| || || ||||| || | ||||||| || |||||| |||||| ||| ||| Sbjct 13957 GCCCCCATAAACTCTTT--AAAG----TGCTTTAGATAATGCGGATCGACGTTATCAATG 14010 Query 1708 ACGTTATACTCGGCATCGTTCGAGAAAACCCTAGAATTGAAATCAAGGTGCCCACTGATA 1767 | ||||||| ||||| || || ||| || ||| ||||| | || || | | Sbjct 14011 ATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGG 14070 Query 1768 TAGTTATGACGCCCTAGGGCACGAGCCCACATTGTCTTGCCGGTTCTAGAATCACCCTCT 1827 || ||||| | |||| | | |||||| |||||| || |||||||| |||||||| Sbjct 14071 TAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCA 14130 Query 1828 ACTATTATACTTATATTTC-TATATGGCCGCGCAGCGGAACCCTTA 1872 | | ||||| | || | ||||||||||||||| | || || Sbjct 14131 ATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTA 14176 Score = 122 bits (134), Expect = 1e-24 Identities = 265/388 (68%), Gaps = 38/388 (10%) Strand=Plus/Plus Query 847 GAATCATACAGAGAATGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGT 906 || |||||| || ||||| ||||| |||||| | |||||||| ||||| || || Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 907 GTATGCGACATTGAAAATACGGATCTATTTTTATGATTCAATAACAAATTAATAAAGATT 966 ||| || ||| || ||| | ||||||||||| || |||||||||||| ||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 967 AAATTTTATTTCATGCTTCTCGTGTACAT-------------AATATACATAAGAACGAT 1013 |||||||||||||| | || |||||| ||| ||||| ||| || Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAAT-TACAT-TGAATAAT 13254 Query 1014 CAGTTGCCCAGGAAACAGCTCTAACAACGTTATTGAGACCAATAACTCCTAACCTATCT- 1072 ||| | |||||||||| || || || | || |||||| ||||| | ||| Sbjct 13255 ACATTGTC-----TACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTA 13309 Query 1073 --AAGTACAATAGCACTAAATGTTTAAAT-CTATTTA-AATAAGT-CGTCCCAGAAGCTC 1127 || | || || ||| ||| ||||||| || || | || | || ||| || | | Sbjct 13310 AAAATTTCATTA-CACGAAA--TTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGT- 13365 Query 1128 GAATCGACTCCGTCCAGACTTGGTAGTTCAGGAACGCTTTGTGAAGATTTAGTGCTCTCC 1187 || ||| |||| || | | |||| ||||| |||||||||||||| ||| | ||| Sbjct 13366 -AAACGA----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCC 13420 Query 1188 TCAGGTTGTGGTTGAACCGGATTTGGAT 1215 |||||||||||||||| || ||||| || Sbjct 13421 TCAGGTTGTGGTTGAATCGAATTTGTAT 13448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8246630963804