Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004648.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq19028 297 3e-77 >seq19028 Length=31091 Score = 297 bits (328), Expect = 3e-77 Identities = 510/735 (69%), Gaps = 23/735 (3%) Strand=Plus/Plus Query 1595 TGAGGGTGATGAATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTCTTTTCCT 1654 ||| |||| |||||||||||| | || | ||| | ||||||| ||| ||||||| Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1655 CATCCAAGTACTCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGA 1714 | || | | |||||||||| || || || || |||||||| | |||||| || || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1715 TGCCACCTTTAATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGG 1774 | ||||| || || | | ||| | ||||| || ||||| ||| | ||||||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1775 CCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTAT 1834 ||||||| || |||||||||||||||||||| || ||||| |||| |||||||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1835 ACCACGCGTCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTAT 1894 |||| || | ||| || | || | ||| ||||| ||||||||| || ||||||| Sbjct 14018 ACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTAT 14077 Query 1895 GTGGGCCCAACGAACGGGCCCACATTGTCTTTCCTGTACGACTCTCTCCCTCTATGACAA 1954 |||| || || || | |||||| |||||| ||||| | | ||| ||||| ||||||| Sbjct 14078 GTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAA 14137 Query 1955 TACTATTGGGTC-TCCAAGGCCGCGCAGCGGCATCCCTGACGTTCTTAGAAACCCACTCT 2013 |||| ||||||| | | |||||||||||||||||||| || || | || |||| Sbjct 14138 TACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCAC 14197 Query 2014 TCAAGTTCTTCGGGAACTTGATCGAAAGAAGAAGAAAGAAAAGGACAAACAAAAACCTCT 2073 |||| ||| | ||| |||||| || |||||||| |||| || | Sbjct 14198 TCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAA---GGT 14240 Query 2074 ACAGGA-GGTGCA--AAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACA 2130 ||||| || ||| || || | |||||| || | | || ||||||| |||| || | | Sbjct 14241 TCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGA 14300 Query 2131 AAATCTTTAGGAGCTAACTCCTTAATTACATTAAGAGCCTC-TGACTTACTGCCGCTGTT 2189 || | | || | || |||| | | ||| || || | | || || || || Sbjct 14301 AACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTT 14360 Query 2190 AAGTGCCTGTGCGTAAGCGTCATTGGCTGTCTGTTGACCCCCTCTTGCAGATCTTCCGTC 2249 || || | ||| | | ||||| | ||| ||| ||| ||||| ||||||| ||| || Sbjct 14361 AA-CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATC 14419 Query 2250 GATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTC 2309 ||| ||||| | ||||| ||| | || | ||| || ||||||| ||| || || Sbjct 14420 GATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATC 14479 Query 2310 GGAGCTGGATTTAGC 2324 || |||||||| Sbjct 14480 TGAAGATGATTTAGC 14494 Score = 149 bits (164), Expect = 1e-32 Identities = 259/371 (70%), Gaps = 7/371 (2%) Strand=Plus/Plus Query 958 TCATACTGAGAACGCTCTTTTGTTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTA 1017 ||||||||| || || ||||||||||| | |||||||| |||||| || || Sbjct 13083 TCATACTGAAAATGCA---TTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1018 TGCAACATTGAAGATCA-GAATCTATTTCTATGATTCTGT-TCAGAATTAATAAATATTA 1075 | || ||| || || | | ||||| ||||| ||| ||| |||||||||||||| Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197 Query 1076 AATTTTATTCTATGAGAAAATTGAGCATCAATTGTGCCCTCAAATACATCATACACCACA 1135 ||||||||| |||| | | |||| | ||| ||||| ||||| | | ||| Sbjct 13198 AATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACA 13257 Query 1136 TGGGACATTGCCCTAATTACATTGTTAATACTAATAACTCCTAACCTATTTAAGTACCTC 1195 | | | || ||||| | |||||||||||||||||| ||||| | | ||| | || Sbjct 13258 TTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTC 13317 Query 1196 ATGCATTGATATTTAAATACTCTTAAGAAACGCCAAGTCTGAAGATGTAAACGAGTCCAG 1255 || || |||||||||||||||||||| | ||| || || |||||||||||| | Sbjct 13318 ATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTG 13377 Query 1256 ATTTGGCAGGTTAGAAAACATTGGTGTATCCCCAACGCTTTCCTCAGGTTGTGGTTGAAC 1315 || | | || | || ||| || ||| | || | |||||||||||||||||||| Sbjct 13378 ATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAAT 13437 Query 1316 TGCACTTGTAT 1326 | | |||||| Sbjct 13438 CGAATTTGTAT 13448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700867424960