Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004651.1 Length=2714 Score E Sequences producing significant alignments: (Bits) Value seq19028 475 6e-131 >seq19028 Length=31091 Score = 475 bits (526), Expect = 6e-131 Identities = 726/1031 (70%), Gaps = 36/1031 (3%) Strand=Plus/Plus Query 1613 TTCTTTTCTTCTTCCAAGTACTCTTTATAGCTGGAGTTTGGTCCAGGATTGCAGAGGAAT 1672 || ||||| || || | | |||||||||||||||| | || ||||||||||| | ||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1673 ATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAG 1732 || || || || ||||| || || | || ||| | ||||||||| ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1733 TCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGATAGTGCGGATCGACGTCATCA 1792 | |||||||||||||| |||||||||||||| |||||||| ||||||||||||| |||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1793 ATGACGTTGTACCAAGCATCATTATTATACACTTTTGGACTTAAATCTAAATGGCCACAT 1852 |||| ||| ||||| |||| ||| ||| | ||| | | ||||||||||| || ||| Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1853 AGATAATTATGTGGTCCCAATGACCTAGCCCACATCGTCTTCCCTGTTCTACTATCACCC 1912 || |||||||||||||| || || || |||||| ||||||||||||||| |||||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1913 TCAATTACTATACTTATTGG-CCTAAATGGCCGCGCAGCTTCACTGAGAACATTATTACA 1971 ||||| || ||||| | || | | |||||||||||||| || |||||| | | Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187 Query 1972 AGCCCATTCTTCAAGTTCTCCGGGAACTTGATTAAAAGNNNNNNNNNNNAAGGGAGAAAT 2031 ||||| |||| | | |||| || || || ||| || Sbjct 14188 TGCCCAGCACTCAATTGTTGAAGGAA---GAACAA-----------CTAAAAGGACTAAC 14233 Query 2032 ATATTCCTCTATAGGAGGAGTAAAAATCCGATCTAAATTACATTTTATATTGTGATATTG 2091 ||| || ||| || | || || |||||||| || |||||| |||||||| Sbjct 14234 ATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG 14293 Query 2092 GAAAATATAATCTTT--TGGAAGTTTTTCCCTCATTATTGCTAACGCCGCTTCAGCCGAA 2149 ||||| || |||| ||| | |||||| || || || | | ||| ||||| || Sbjct 14294 --AAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGAT 14351 Query 2150 CCTGCATTGAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTCTAGCAGAT 2209 ||| | | || ||||| | | ||||||| | ||| ||| |||||||||||||||| Sbjct 14352 GTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGAT 14411 Query 2210 CGTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAAGAT 2269 ||||||||||| ||||| | ||||||||| ||||||||| ||| ||| ||||||| Sbjct 14412 CGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTC 14471 Query 2270 TTGACATCGGAGCTGGATTTAGCTCCCTGGAAGTTTGGATGGTATTGAGTTGAGGTATTA 2329 || ||||| || |||||||| ||||||||||| |||||| || |||||| Sbjct 14472 TTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGGTATGTGGTGCTAGTATTA 14531 Query 2330 GGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTGGCATTTACCTTTGAATTGGATG 2389 || || ||| |||||| ||||| |||||||| || || || |||| |||||| || Sbjct 14532 GGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATA 14591 Query 2390 AGCGCGTGGATATGCATAGACCCATCTTGGTGTTTTTCTTGTGATACTCTGATAAATAAT 2449 || || ||| |||| | |||||| |||||||||||||| | ||||| ||| | | Sbjct 14592 AGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCT--AAAACAGT 14649 Query 2450 TTGTCAGATGGACATGAAATGTTTTGAAGGAGTTCGAGCATCTGCTCTTTCGGTATTGGG 2509 || | || ||||| |||| | || | | | || | || || ||||| || | || Sbjct 14650 TTATTTGAAGGACAAGAAACCTGTTTCAAGTGCTCTAAGATTTGATCTTTAGGAAGAGGA 14709 Query 2510 CATTTTGGGAAAGTGAGAAAGATATTTTTTGCCTTAACTTGGAATTGGTTTGTA--CGTG 2567 |||||||| || || ||||| || ||||| | || || |||||| | || | | || Sbjct 14710 CATTTTGGAAATGTAAGAAATATGTTTTTAGAATTTACCTGGAAT--GAATGAAGCCTTG 14767 Query 2568 GCAT--------ATTGAATTGGGTGCTCTACAAACCTCATAGGAATGGGGTGCTTTGGGT 2619 |||| | |||| ||||| || | || || || | || |||||||||||| Sbjct 14768 GCATTTTGTAGAAATGAAATGGGTACT---CCGACTTCCTATGCATTGGGTGCTTTGGGA 14824 Query 2620 GCCTATTTATA 2630 ||| | |||| Sbjct 14825 GCCCTTATATA 14835 Score = 168 bits (186), Expect = 1e-38 Identities = 267/382 (70%), Gaps = 33/382 (9%) Strand=Plus/Plus Query 958 CATACTGAAAATGCTCTATTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTAT 1017 |||||||||||||| |||||||||||| | |||||||| ||||||||||| ||| Sbjct 13084 CATACTGAAAATGC---ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1018 GCTACTTTGAAAGTCAGGAGTTATTTCTATGACTCAGTGACGAATTAATAAATAGT-AAA 1076 |||| ||| | | |||||||| ||||| || | |||||||||||| | || Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1077 TATATATCATGATCTTCAATTACATCAATTGTT----------CCTT--CTAATACATTG 1124 | ||| ||||||| ||||| |||||| | |||| | || |||||||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTG 13260 Query 1125 ---------------ACATTGTTTATAATAATCACGCCTAATTTATCTAAATATTT-ATT 1168 | |||||| ||| |||| || |||||| |||||| |||| ||| Sbjct 13261 TCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATT 13320 Query 1169 ACACTGATATTTAAATACTACTAAGAAGCGCGAGGTCTGAGGATGTAAATGAGTCCAGAT 1228 |||| || ||||||||||| |||||| | ||| ||||| ||||| |||||| ||| Sbjct 13321 ACAC-GAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGAT 13379 Query 1229 TTTGCAGACTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTTGTTGAACTG 1288 ||| || || ||| |||||| | || | ||||||||||||| |||||| | Sbjct 13380 CTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCG 13439 Query 1289 TATTTGTAACGTGATTATGTCG 1310 ||||||| |||||||||| Sbjct 13440 AATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8572913492240