Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004655.1 Length=2785 Score E Sequences producing significant alignments: (Bits) Value seq19028 257 3e-65 >seq19028 Length=31091 Score = 257 bits (284), Expect = 3e-65 Identities = 559/829 (67%), Gaps = 21/829 (3%) Strand=Plus/Plus Query 1686 TTCTTTTCCTCGTCCAGAAACTCTTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAG 1745 || |||||||| || || ||||||||||| || || || || |||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1746 ATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAG 1805 || || || || ||||| || || | | ||| | ||||| ||| ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1806 TCTCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTTAGATAGTGGGGATCGACGTCATCA 1865 | |||||||||||||| || ||||| |||||||||||||| || |||||||||| |||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1866 ATGACGTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGACTGAGATCCAGGTGTCCACAT 1925 |||| ||| |||||||| | || || | || | | | ||| | || || ||| Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1926 AAGTAGTTGTGTGGACCCAGAGAGCGGGCCCACATTGTCTTTCCGGTCCTACTATCGCCC 1985 | ||| || ||||| || | ||| | |||||| |||||| || || ||| || ||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1986 TCGATGACGATACTATTAGGTC-TCCATGGCCGCGCAGCGGAACCCATCACGTTCTCGGA 2044 || ||||| ||||| || |||| | ||||||||||||||| | || | || || || | Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187 Query 2045 AACCCAGACTTCAAGTTCCTCAGGAACGTTAGTAAAAGAAGAAGACAGAAAAGGAGAAAC 2104 ||||| || |||| || | || |||||| | ||||||| ||| Sbjct 14188 TGCCCAG----CA-----CTCA-----ATTGTTGAAGGAAGAACAACTAAAAGGACTAAC 14233 Query 2105 ATAAGGAGCTGG-TGGCTCTTGAAAAATCCTATCTAAATTACTACTTAAGTTATGATATT 2163 |||||| | || || | || || || | |||||| || | || |||||||||| Sbjct 14234 ATAAGGTTCAGGAGGGGGCATG-AATATTCGATCTAATTTTGGAACTATATTATGATATT 14292 Query 2164 GAAAAATAAATTCTTTTGGGAGTTTCTCCTTAATAATTAGAAGTGCTGCTGCCTTGGAAC 2223 |||| | ||| | | ||| | ||| || ||||||| ||| ||| || | | || Sbjct 14293 GAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATG 14352 Query 2224 CTGAGTTTAATGCTTCGGCACATGCGTCATTAGCATTGTGGCAGCCGCCTCTAGCCGATC 2283 | |||| ||||| ||| || | ||||| | | || | || |||||||| |||| Sbjct 14353 TAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATC 14412 Query 2284 TGGCGTCGATCTGGAATTCGCCCCACTCAGTGGTATCCCCATCTTTGTCGATGTAGGACT 2343 | ||||| || || | |||||| || ||| ||| | ||||| ||||||| || Sbjct 14413 GTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCT 14472 Query 2344 TGACGTCGGAGCTGGATTTAGCTCCTTGAATGTTCGGATGGAAATGTGTTGATCGTGTTG 2403 | || || || |||||||| ||| | ||| || ||| ||||| || | || || Sbjct 14473 TAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTGCTAGTATT- 14530 Query 2404 GGGAT--ACCAGGTCGAAGAATCGCTTATTTGTGCATGAGAATTTGCCTTCGAACTGAAT 2461 |||| | | |||||| || ||| | || ||||||||||| ||||| Sbjct 14531 AGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAAT 14590 Query 2462 AAGCATGTGGAGATGAGGTTGCCCATCATCGTGAAGTTCTCGGCAAACT 2510 ||| ||| |||| || |||||| | ||| |||| | || ||| Sbjct 14591 AAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACT 14639 Score = 181 bits (200), Expect = 2e-42 Identities = 360/534 (67%), Gaps = 23/534 (4%) Strand=Plus/Plus Query 996 GAATCATACTGAGAATGCGTTGTTATTGTATATGGCATGTACACATGCCTCGAATCCTGT 1055 || ||||||||| ||||| ||||| |||||| | || ||||| || |||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1056 GTACGCTACGCTGAAAATACGCATCTATTTCTATGATGCAGTGACAAATTAATAAAGGTT 1115 || ||| ||| || ||||| ||||| ||||| || |||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1116 GAATTTTATTGCATGTTGCTCCGTAACTTGGAGTGTGTTTAGTAATACATTGTACAGAAC 1175 |||||||||| |||| | || || | | ||| | | ||||||| | | || Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1176 ATGAGCAACAGCTTGAAGTACAGTGTTAATGGAAATAACGCCTATCATATCTAAATACTT 1235 || | |||||| || | | ||||||| |||||| |||| |||||| | || Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1236 GAGCACCTGATATTTAAATACTCTTAAGAAAAGACCAGTCTGAGGCCGTAAGGTCGTCCA 1295 | || || ||||||||||||||||||||| ||| |||| ||||| |||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1296 GACCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGCGCCTTCCTCAGGTTGTGGTTGAA 1355 || |||||||||||| ||| |||||||| ||| |||||||||||||||||||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1356 CCGTATCTGGAGTGTGATGATGTCGTGGTTCATGTTCCCTGGCCTCCTGTCGTGGTTGGT 1415 || || || | | ||| |||||| || || ||| || | ||||||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTGGTTGAG 13496 Query 1416 GATTTCGAAATAGAG-GGGATTTGTTATTTCCC-------------AGGTAA------AA 1455 ||| | |||||| || | | |||||||| | |||| | Sbjct 13497 GATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTAG 13556 Query 1456 ACGCCATTCTTGGCTTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATG 1509 ||||||||| | ||||| | ||||||||| |||||||||||| ||||||| Sbjct 13557 ACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATG 13610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8796739723750