Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004673.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq19028 235 9e-59 >seq19028 Length=31091 Score = 235 bits (260), Expect = 9e-59 Identities = 348/492 (71%), Gaps = 21/492 (4%) Strand=Plus/Plus Query 1633 TTCTTTTCCTCGTCCAGATACTCTTTATAGCTAGCGTTGGGCCCAGGATTGCAGAGGAAG 1692 || |||||||| || || ||||||||||||| | | || ||||||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1693 ATTGTTGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTT---GTGTTGGATTGC 1749 ||||| ||||| ||||| || || | || ||| | ||||| ||| || |||| | Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGA---C 13944 Query 1750 CAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCTACGCCA 1809 || | |||||||||||||| ||||||||||||||||| || | |||||||| ||| | Sbjct 13945 CAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTA 14004 Query 1810 TCAATGACGTTATACCAAGCGTCGTTACTGTACACCTTTGGGCTTAGATCTAGATGCCCA 1869 ||||||| ||||||||| || | || || | || | | ||||| ||| || Sbjct 14005 TCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCG 14064 Query 1870 CATAAATAATTATGTGGGCCTAAAGACCTAGCCCACATTGTCTTCCCAGTACGACTATCA 1929 |||| ||||||||||| |||||||| || |||||| ||||||||| || | | ||| Sbjct 14065 CATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCA 14124 Query 1930 CCCTCAATTACTATACTTTGAGGTC-TCAGGGGCCGCGCAGCGGCGTCGACAACATTCTC 1988 |||||||| || ||||| | |||| | | |||||||||||||| || |||||| || Sbjct 14125 CCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTC 14184 Query 1989 AGACACCCATTCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAGGAAAAAGGAGA 2048 || |||| |||| ||| | ||| |||||| | ||||||| Sbjct 14185 AGCTGCCCAGCACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACT 14230 Query 2049 AACATAAGGAGCTGGTGGCTCCTGAAAGATTCTGTCTAGATTTGCATTTAAATTATGAAA 2108 ||||||||| | || || | || |||| |||| |||| | || ||||||| | Sbjct 14231 AACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATA 14290 Query 2109 TTGTAGTACAAA 2120 ||| | || ||| Sbjct 14291 TTGAAATAGAAA 14302 Score = 105 bits (116), Expect = 1e-19 Identities = 289/441 (66%), Gaps = 9/441 (2%) Strand=Plus/Plus Query 940 GAATCACACCGAGAATGCATTGATGCTTTATATGGCTTGTACCCATGCTAGCAATCCTGT 999 || ||| || || ||||||||| || ||||| || || ||||| |||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTTG---TATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1000 TTATGCTACTCTTAAGATTAGAATATATTTTTATGACTCTGTAACGAACTAATATTAATA 1059 ||| |||| | | | | | ||||||||||| |||| | || ||||| |||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATA--AATA 13194 Query 1060 AAGTTTAAATTGTATATCTGAATATTGGTCTACATACATTGTTTGATTAATTACATTGTA 1119 || |||| ||| || ||||| ||||| || |||||| | |||||||||| | Sbjct 13195 ----TTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAA 13250 Query 1120 CAATACATGTTCAACGGCTTTAATAACTAAATTAATTGAGATTACACCTAGATTGTTGAG 1179 ||||||| || || ||| |||||| ||||| || ||||||| || | Sbjct 13251 TAATACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAA 13310 Query 1180 ATGTTTGAGGACTTGGGTTTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTGTAAGGT 1239 | ||| | || | ||| ||||| |||||||||| |||||||| |||| Sbjct 13311 AAATTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACG 13370 Query 1240 CGTCCAGATTCGGAAGGTTAGAAAACACTTGTGTATTTCCAGAGCTTTCCGTAGGTTGTA 1299 |||| ||| |||| | || ||| ||||| | | ||| | |||| ||||||| Sbjct 13371 AGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTG 13430 Query 1300 GTTGAAATGGATCCTGAGTGTTATTATGTCCATGTTCGTCGTGAATGGACGGTTGTCGTG 1359 |||||| | || | | |||||||| | ||| | ||| | | | ||| Sbjct 13431 GTTGAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTG 13490 Query 1360 GTTGAGGATCTTGAAATAGAG 1380 |||||||||||||||||| || Sbjct 13491 GTTGAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652884700190