Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004674.1 Length=2799 Score E Sequences producing significant alignments: (Bits) Value seq19028 215 9e-53 >seq19028 Length=31091 Score = 215 bits (238), Expect = 9e-53 Identities = 556/841 (66%), Gaps = 37/841 (4%) Strand=Plus/Plus Query 1684 TTCTTTTCCTCGTCCAGAAACTCTTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAG 1743 || |||||||| || || ||||||||||| || || || || |||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1744 ATAGTGGGAATGCCGCCTTTAATTTGAATTGGCTTCCCGTATTTTGTATTGCTTTGCCAG 1803 || || || || || || || || | | ||| | ||||||||| ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1804 TCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTTTGAGGTAGTGGGGGTCGACGTCATCA 1863 | |||||||||||||| || ||||| ||||| || || || || || ||||||| |||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1864 ATGACGTTGTACCATGCGTCGTTTGAATATACCTTGGGAGACAGATCCAGGTGTCCACAA 1923 |||| ||| ||||| || | |||||||| | || | || ||| | || || || Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1924 AGATAATTATGGGGTCCCAGTGAACGAGCCCACATTGTTTTGCCGGTTCGGCTATCACCT 1983 || |||||||| ||||| | || | |||||| ||| || || |||| ||||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1984 TCTAGAACAATACTGATCGGTC-TCCATGGCCGCGCAGCGGGACTGCATATATTTTCGGA 2042 || | |||||||| | |||| | ||||||||||||||| | | | |||||| | Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187 Query 2043 TACCCATACCTCTATGTCTTCTGGGACTTGTGTAAAAGATGATGATAAGAACGGACTAAC 2102 | |||| ||| | |||| | || || || | || |||||||| Sbjct 14188 TGCCCAGCACTC-------------AATTGT-TGAAGGAAGAACAACTAAAAGGACTAAC 14233 Query 2103 GTAAGTTTGTGGCGGAGCCTGGAAGATTCTATCTGCGTTAGCAGATATGTTATGGAACTG 2162 |||| || || || | | ||| |||| |||| || | | ||| ||||| | || Sbjct 14234 ATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG 14293 Query 2163 TaaaaaaaaGGACTT---TGGATCTTTTTCTTTAATAATTTGAAGAGCCTCGGATTTAGA 2219 || | || |||| ||| ||||||| ||||||| ||| || || | || Sbjct 14294 AAATAGAA---ACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGA 14350 Query 2220 CGAAGCATTCAACGCGTCTGCATATACCTGA---GCTAAATGTTGGCCCTCCCCCCTTGC 2276 | |||| | ||||| |||||| |||| | | | | ||| || ||| || || || Sbjct 14351 TGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATG-TGAACCT--CCTCTAGC 14407 Query 2277 ACTTCTGGCATCGACTTGGAAAAGTCCAGCGTCAAGAAATTCCCCTCCCTTTTCAATGTA 2336 | || |||||| ||| ||| || ||| | || | | || | ||||| Sbjct 14408 AGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTA 14467 Query 2337 AGCTTTGACATCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTG---- 2392 || ||||| || ||||||||||| || | ||| || ||| ||||| || Sbjct 14468 TTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTGCTAG 14526 Query 2393 -ATCGGGATGGGGAAATGAGATCGAAGAATCTCGGGTTGGTACATTGGAACTTGCCTTCG 2451 || |||||| |||| ||||||| ||| ||||| || |||| |||||||||| Sbjct 14527 TATTAGGATGG----ATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCG 14582 Query 2452 AATTGGATGAGAACATGGAGATGAGGCACCCCATCCTGATGTAGTTCTCTGCAAACCCTA 2511 ||||| || || ||||| |||| |||||||||| ||| |||| || || ||| Sbjct 14583 AATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCTA 14642 Query 2512 A 2512 | Sbjct 14643 A 14643 Score = 122 bits (134), Expect = 2e-24 Identities = 256/385 (66%), Gaps = 3/385 (1%) Strand=Plus/Plus Query 994 GAATCACACAGAGAATGCGTTGTTATTGTATATGGCATGTACACATGCCTCGAATCCTGT 1053 || ||| || || ||||| ||||| |||||| | || ||||| || |||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1054 GTATGCTACGCTGAAAATACGCATCTATTTTTATGATGCAGTGACAAATTAATAAAGGTT 1113 ||| ||| ||| || ||||| ||||||||||| || |||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1114 GAATTTTATTGCATGTTGCTCCGTAACTTGGAGTGTGTTTAGTAATACATCGTACACAAC 1173 |||||||||| |||| | || || | | ||| | | ||||| | | | || Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1174 ATGATCAACAGCTTGAAGGACAGTGTTAATGGAAATAACGCCTATCATATCTAAATACTT 1233 || || |||||| || | | ||||||| |||||| |||| |||||| | || Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1234 GAGCACTTGNNNNNNNNNNNNTCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCA 1293 | || | |||||||||| ||| |||| ||||| |||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1294 GACCTTGAAGTTGAGAAAACACTTGTGAATCCCCAATGCCTTCCGAAGGTTGTGGTTGAA 1353 || |||||||||||| ||| ||||||| || | |||||| |||||||||||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1354 CCGTATCTGGAGTGTGATGATGTCG 1378 || || || | | ||| |||||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8841523125980