Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30]
33,873 sequences; 833,080,760 total letters
Query= NC_004674.1
Length=2799
Score E
Sequences producing significant alignments: (Bits) Value
seq19028 215 9e-53
>seq19028
Length=31091
Score = 215 bits (238), Expect = 9e-53
Identities = 556/841 (66%), Gaps = 37/841 (4%)
Strand=Plus/Plus
Query 1684 TTCTTTTCCTCGTCCAGAAACTCTTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAG 1743
|| |||||||| || || ||||||||||| || || || || |||||||| | ||||
Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887
Query 1744 ATAGTGGGAATGCCGCCTTTAATTTGAATTGGCTTCCCGTATTTTGTATTGCTTTGCCAG 1803
|| || || || || || || || | | ||| | ||||||||| ||||| |||
Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947
Query 1804 TCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTTTGAGGTAGTGGGGGTCGACGTCATCA 1863
| |||||||||||||| || ||||| ||||| || || || || || ||||||| ||||
Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007
Query 1864 ATGACGTTGTACCATGCGTCGTTTGAATATACCTTGGGAGACAGATCCAGGTGTCCACAA 1923
|||| ||| ||||| || | |||||||| | || | || ||| | || || ||
Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067
Query 1924 AGATAATTATGGGGTCCCAGTGAACGAGCCCACATTGTTTTGCCGGTTCGGCTATCACCT 1983
|| |||||||| ||||| | || | |||||| ||| || || |||| |||||
Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127
Query 1984 TCTAGAACAATACTGATCGGTC-TCCATGGCCGCGCAGCGGGACTGCATATATTTTCGGA 2042
|| | |||||||| | |||| | ||||||||||||||| | | | |||||| |
Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187
Query 2043 TACCCATACCTCTATGTCTTCTGGGACTTGTGTAAAAGATGATGATAAGAACGGACTAAC 2102
| |||| ||| | |||| | || || || | || ||||||||
Sbjct 14188 TGCCCAGCACTC-------------AATTGT-TGAAGGAAGAACAACTAAAAGGACTAAC 14233
Query 2103 GTAAGTTTGTGGCGGAGCCTGGAAGATTCTATCTGCGTTAGCAGATATGTTATGGAACTG 2162
|||| || || || | | ||| |||| |||| || | | ||| ||||| | ||
Sbjct 14234 ATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG 14293
Query 2163 TaaaaaaaaGGACTT---TGGATCTTTTTCTTTAATAATTTGAAGAGCCTCGGATTTAGA 2219
|| | || |||| ||| ||||||| ||||||| ||| || || | ||
Sbjct 14294 AAATAGAA---ACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGA 14350
Query 2220 CGAAGCATTCAACGCGTCTGCATATACCTGA---GCTAAATGTTGGCCCTCCCCCCTTGC 2276
| |||| | ||||| |||||| |||| | | | | ||| || ||| || || ||
Sbjct 14351 TGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATG-TGAACCT--CCTCTAGC 14407
Query 2277 ACTTCTGGCATCGACTTGGAAAAGTCCAGCGTCAAGAAATTCCCCTCCCTTTTCAATGTA 2336
| || |||||| ||| ||| || ||| | || | | || | |||||
Sbjct 14408 AGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTA 14467
Query 2337 AGCTTTGACATCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTG---- 2392
|| ||||| || ||||||||||| || | ||| || ||| ||||| ||
Sbjct 14468 TTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTGCTAG 14526
Query 2393 -ATCGGGATGGGGAAATGAGATCGAAGAATCTCGGGTTGGTACATTGGAACTTGCCTTCG 2451
|| |||||| |||| ||||||| ||| ||||| || |||| ||||||||||
Sbjct 14527 TATTAGGATGG----ATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCG 14582
Query 2452 AATTGGATGAGAACATGGAGATGAGGCACCCCATCCTGATGTAGTTCTCTGCAAACCCTA 2511
||||| || || ||||| |||| |||||||||| ||| |||| || || |||
Sbjct 14583 AATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCTA 14642
Query 2512 A 2512
|
Sbjct 14643 A 14643
Score = 122 bits (134), Expect = 2e-24
Identities = 256/385 (66%), Gaps = 3/385 (1%)
Strand=Plus/Plus
Query 994 GAATCACACAGAGAATGCGTTGTTATTGTATATGGCATGTACACATGCCTCGAATCCTGT 1053
|| ||| || || ||||| ||||| |||||| | || ||||| || ||||||||
Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136
Query 1054 GTATGCTACGCTGAAAATACGCATCTATTTTTATGATGCAGTGACAAATTAATAAAGGTT 1113
||| ||| ||| || ||||| ||||||||||| || |||||||||||| ||
Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196
Query 1114 GAATTTTATTGCATGTTGCTCCGTAACTTGGAGTGTGTTTAGTAATACATCGTACACAAC 1173
|||||||||| |||| | || || | | ||| | | ||||| | | | ||
Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256
Query 1174 ATGATCAACAGCTTGAAGGACAGTGTTAATGGAAATAACGCCTATCATATCTAAATACTT 1233
|| || |||||| || | | ||||||| |||||| |||| |||||| | ||
Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316
Query 1234 GAGCACTTGNNNNNNNNNNNNTCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCA 1293
| || | |||||||||| ||| |||| ||||| ||||
Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376
Query 1294 GACCTTGAAGTTGAGAAAACACTTGTGAATCCCCAATGCCTTCCGAAGGTTGTGGTTGAA 1353
|| |||||||||||| ||| ||||||| || | |||||| ||||||||||||||
Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436
Query 1354 CCGTATCTGGAGTGTGATGATGTCG 1378
|| || || | | ||| ||||||
Sbjct 13437 TCGAATTTGTATTTCGATTATGTCG 13461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8841523125980
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