Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_004732.1 Length=2662 Score E Sequences producing significant alignments: (Bits) Value seq19028 150 3e-33 >seq19028 Length=31091 Score = 150 bits (166), Expect = 3e-33 Identities = 215/301 (71%), Gaps = 10/301 (3%) Strand=Plus/Plus Query 1540 TCGAGAAACTCTTTATAGCTGGCCCCCTCTCCGGGATTGCAAAGCACTATTGATGGGATT 1599 ||||| |||||||||||||||| || |||||||| | | |||| || || Sbjct 13840 TCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATC 13899 Query 1600 CCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTG--CCAGTCCCTTTGGG 1657 ||||| || || | || ||| |||| ||||| ||| ||| ||| | ||||||| Sbjct 13900 CCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTG--CTGGACCAATTGCTTTGGG 13957 Query 1658 CCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAAATAATGCGGAGCGACGTCATCAATGA 1717 |||| || || ||||| |||||||||| |||||||||| |||||| |||||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAG------ATAATGCGGATCGACGTTATCAATGA 14011 Query 1718 CGTTATACTTGACGTCATTTGAGAAAACCCTAGAATTGAAATCAAGGTGTCCACTCAAAT 1777 ||||||| | | | |||||| ||| || ||| ||||| | || || | | | Sbjct 14012 TGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGT 14071 Query 1778 AGTTATGTGGGCCTAAAGACCGAGCCCACATTGTTTTGCCCGTTCGAGAATCACCCTCAA 1837 | |||||||| |||||||| | |||||| ||| || || |||| ||| |||||||||| Sbjct 14072 AATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAA 14131 Query 1838 T 1838 | Sbjct 14132 T 14132 Score = 102 bits (112), Expect = 1e-18 Identities = 256/384 (67%), Gaps = 30/384 (8%) Strand=Plus/Plus Query 850 GAATCATACGGAGAACGCTTTATTATTGTATATGGCATGTACTCATGCATCTAACCCTGT 909 || |||||| || || || ||| |||||||| | |||||||||||||| ||||| Sbjct 13080 GACTCATACTGAAAATGC---ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 910 GTACGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAACGTT 969 || || ||| || || | ||||||||||| || |||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 970 GAATTTTATTATATGATTCTCGATTACA------------TAATTTACATATGAACGGTC 1017 |||||||||| ||||| || | |||| | | |||||| |||| | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACAT-TGAATAATA 13255 Query 1018 TGTCGCCCATGATACAGCACGTATGACGTTATTGAGACCGATAACCCCTAATCTATCTAA 1077 | | | |||||| | || | || || | || ||||| ||||||| ||||| Sbjct 13256 CATTGTC-----TACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAA 13310 Query 1078 ATACAACATAACTAAATGTTTAAAT-CTATTTA-AATAAGT-CGTCCCAGAAGCTCGAAT 1134 | | ||| || | ||||||| || || | || | || ||| || | | || Sbjct 13311 AAATTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGT--AAA 13368 Query 1135 CGATTCCGTCCAGACTTGGAAGTTCAGGTATGCTTTGTGAAGATTTAGCGCTCTCCGCAG 1194 ||| |||| || | |||||| ||| | |||||||||||||| || | ||| ||| Sbjct 13369 CGA----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAG 13424 Query 1195 GTTGTGGTTGAATCGGATTTGTAT 1218 ||||||||||||||| |||||||| Sbjct 13425 GTTGTGGTTGAATCGAATTTGTAT 13448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8406573379704