Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_005031.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq19028 306 6e-80 >seq19028 Length=31091 Score = 306 bits (338), Expect = 6e-80 Identities = 511/734 (70%), Gaps = 21/734 (3%) Strand=Plus/Plus Query 1599 TGAGGGTGACGAATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTT 1658 ||| |||| |||||||||||| | | || ||| | ||||||| ||| || || | Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1659 CGTCCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGA 1718 | || | | |||||||||| || || || || |||||||| | |||||| || || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1719 TTCCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGG 1778 | ||||| || || | | || | ||||| || ||||| ||| | ||||||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1779 CCCCCATGAATTCTTTAAAGTGCTTTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGT 1838 ||||||| || |||||||||||||||| || || || ||||||| |||||||| ||| | Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1839 ACCAGGCATCATTGCTGTATACCTTT--GGGCTCAGATCTAAATGACCGCACAAATAATT 1896 ||||||||| ||| || ||| ||| ||| ||||||||||||||| | ||||| Sbjct 14018 ACCAGGCATTATT--TGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATT 14075 Query 1897 ATGTGGGCCTAAAGAACGAGCCCACATCGTCTTCCCTGTACGGCTCTCACCCTCTATGAC 1956 |||||| |||||||| | |||||| ||||||||||| | ||||||||| ||||| Sbjct 14076 ATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGAC 14135 Query 1957 AATACTAACAGGTC-TCCATGGCCGCGCAGCGGCATCCCTTACGTTTTCGGAAACCCAGC 2015 |||||| |||| | |||||||||||||||||||||| || ||||| | |||||| Sbjct 14136 AATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGC 14195 Query 2016 ACTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAAAGAAATGGACAAACAAAAACCT 2075 |||||| ||| | ||| |||||| || ||| |||| |||| || | Sbjct 14196 ACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTT 14241 Query 2076 CTGCACGAGGTGTAAAAATCCTATCTAAATTAGCTTTAATATTATGATATTGAAAAATAA 2135 | | | | || | || || | |||||| || | ||||||||||||||||| | || Sbjct 14242 CAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAA 14301 Query 2136 AATCTTTAGGGAGCTCCTCTCTAATAATAGCTAAAGCTGCTTCGGCTGAACCTGAATTTA 2195 | | | || | | ||||||||||||| | ||| |||| ||| | | ||| Sbjct 14302 ACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTA 14361 Query 2196 GGGCCTTTGCAGCTGTGTCGTTAGCCGTCTGTTGACCTCCTCGAGCACTTCTTCCGTCGA 2255 || | ||||| | || || | || ||| |||||||| |||| || ||| |||| Sbjct 14362 ACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGA 14421 Query 2256 CCTGGAATTCTCCCCATTCCAGTGT-GTCTCCGTCCTTGTCGATATAAGACTTGACGTCG 2314 || || | ||||| | | |||| || | ||| || |||| || ||| || || Sbjct 14422 TTTGAAAATTGCCCCAGT-CGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCT 14480 Query 2315 GAGCTTGATTTAGC 2328 || ||||||||| Sbjct 14481 GAAGATGATTTAGC 14494 Score = 161 bits (178), Expect = 2e-36 Identities = 254/358 (71%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 963 CATACTGAGAACGCTCTTTTATTATATATGGCTTGTACTCATGCCAGTAACCCAGTGTAT 1022 |||||||| || || || || ||||| || |||||||| ||| || || ||| Sbjct 13084 CATACTGAAAATGCA---TTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1023 GCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAAAATTAATAAAGATTAAAT 1082 |||| ||| || | | ||||| ||||| ||| ||||||||||| ||| ||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1083 TTTATTATATGAGATTGTGTTACATATTCTGTGTTTTCCAATACATCCCATAAAACATGA 1142 |||||| |||| ||| ||||| |||| | || | ||||| |||| |||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTG 13260 Query 1143 TC-ACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCA- 1200 || ||| |||||||| | ||||||||||||||| ||||| || |||||| |||||| Sbjct 13261 TCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1201 TACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGA 1260 |||| ||| ||||||||||||||||| | ||| |||| |||| ||||||| || Sbjct 13320 TACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGA 13378 Query 1261 TCTGGAAGATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGAA 1318 ||| |||| | || ||| | ||| | || | |||||||||||||| ||||| Sbjct 13379 TCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694469728324