Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_005319.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq19028 282 7e-73 >seq19028 Length=31091 Score = 282 bits (312), Expect = 7e-73 Identities = 491/715 (69%), Gaps = 17/715 (2%) Strand=Plus/Plus Query 1619 GCATTCTTTAAAGCCCAATTTTTGAGTGCGGTATTTTTCTCTTCGTCCAAGAACTCTTTA 1678 ||||| | |||| ||||||||| | | ||||||| || || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1679 TAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGA 1738 ||||| || | || || |||||||| | |||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1739 ACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTG 1798 || ||| |||||||||| ||||| ||| | |||||||||||||| || || || Sbjct 13915 ACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTA 13974 Query 1799 AAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATCACGTTGTACCAAGCATCATTACTG 1858 ||||||||||| || || |||||||||| |||||| | ||| ||||| |||| ||| Sbjct 13975 AAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAA 14034 Query 1859 TAGACCTTAGGACTAAGGTCTAAGTGACCACACAGGTAATTATGTGGACCCAAAGACCTA 1918 || | ||| | | | ||||| ||||| || |||||||||||||| || ||||| || Sbjct 14035 TAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTT 14094 Query 1919 GCCCACATCGTCTTCCCCGTACGACTATCACCCTCTATGACAATAGTTTTGGGTC-TCAA 1977 |||||| |||||||| || | | |||||||| ||||||||| | ||||||| | || Sbjct 14095 GCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAA 14154 Query 1978 TGGCCGCGCAGCGGCACTCACCACATTCTCAGCAGCCCATTCTTCAAGTTCATCTGGAAC 2037 |||||||||||||||| | ||||| ||||| ||||| |||| Sbjct 14155 TGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA------------- 14201 Query 2038 TTGGTCAAAAGAAGANNNNNAGAAAGGAGAAACATAAACCTCAACTGGGGGAGTAAATAT 2097 | || || ||||| |||||| ||||||| ||| ||||| | ||||| Sbjct 14202 -TTGTTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATAT 14260 Query 2098 CCTATCTAAATTAGCATTTAGATTATGAAATTGTAGTACATAATCTTTAGGTGCTAACTC 2157 | |||||| || | | || ||||||| |||| | || | | | | || | || Sbjct 14261 TCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTC 14320 Query 2158 CTTAATCACTCTAAGAGCCTC-TGACTTACTGCCTGCGTTAAGTGCTGCGGCGTAAGCAT 2216 |||| | ||| || || | | || || || | | ||| | || | ||| Sbjct 14321 TCTAATAATAGAAAGCGCTTCTTCAATTGATG-TAGCACTTAACGCTTCTGCAGATACAT 14379 Query 2217 CATTGGCTGTCTGTTGACCCCCTCTTGCAGATCTGCCATCGATCTGAAACTCTCCCCAGT 2276 |||| | ||| ||| ||| ||||| ||||||| |||||||| ||||| | ||||||| Sbjct 14380 CATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGT 14439 Query 2277 CGATGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCCGAGCTTGATTTAGC 2331 || || || | ||| ||| | | || ||| || || || ||||||||| Sbjct 14440 CGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGC 14494 Score = 125 bits (138), Expect = 1e-25 Identities = 252/368 (68%), Gaps = 7/368 (2%) Strand=Plus/Plus Query 968 TCATACGGAGAATGCGTTGATGTTGTATATGGCCTGTACACATGCCAGTAATCCTGTGTA 1027 |||||| || ||||| ||| |||||||| | || ||||| ||||||||| || Sbjct 13083 TCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1028 TGCAACTTTGAAGATCA-GAATCTATTTCTATGATTCTGT-TCAGAATTAATAAATATTG 1085 | ||| ||| || || | | ||||| ||||| ||| ||| ||||||||||||||| Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197 Query 1086 AATTTTATTGAATAAGATTGGTCTACATATACAATATGTTGTAATACATTCCATAAGACA 1145 ||||||||| || | ||| ||||| || | || | | |||||| |||| ||| Sbjct 13198 AATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACA 13257 Query 1146 TGATCAACTGCCCTAATTACATTATTAATACTGATAATGCCTAAATTATCTAGATACTTA 1205 | || || || ||||| | ||| |||||||| |||| ||||| |||| | | || Sbjct 13258 TTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTC 13317 Query 1206 AGCACTTGGGTCTTAAAGACCCTTAAGAAATGACCAGTCCGAGGCTGTGAGGTCATCCAG 1265 | || | ||||| || ||||||||| ||| |||| || | ||| | Sbjct 13318 ATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTG 13377 Query 1266 ATTCGGAAGGCTAGGAAACATTTGTGAATCCCCAGTGCTTTCCTCAGGTTGTGATTGAAT 1325 || |||| |||||| |||||||| |||| | |||||||||||||| |||||| Sbjct 13378 ATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAAT 13437 Query 1326 TGTACTTG 1333 | | ||| Sbjct 13438 CGAATTTG 13445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8675276638416