Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_005320.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq19028 242 6e-61 >seq19028 Length=31091 Score = 242 bits (268), Expect = 6e-61 Identities = 292/394 (74%), Gaps = 5/394 (1%) Strand=Plus/Plus Query 1592 GTGATGCTGACGAAGACTGCATTTTTTATTGCCCACGACTTTAATGCAGTATTCTTTTCC 1651 |||||| || ||| ||||||| | | | ||| |||||| | |||| |||||| Sbjct 13777 GTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCC 13836 Query 1652 TCGTCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCATAGGAAGATAGCGGGA 1711 || || ||| | ||||||||||| || | || || |||||||| | |||||| | || Sbjct 13837 TCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGT 13896 Query 1712 ATGCCACCTTTAATTTGAACAGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGG 1771 || ||||| || || | |||||| ||||||| ||| ||||| ||| | |||||| Sbjct 13897 ATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGG 13956 Query 1772 GCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTG 1831 |||||||| || |||||||| |||||||| || |||||||| |||| |||||||| ||| Sbjct 13957 GCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTA 14016 Query 1832 TACCAGGCGTCATTATTGTATACCTTT--GGACTCAAATCAAGATGACCACACAAATAAT 1889 |||||||| | || ||| ||| ||| | ||||||| | |||||| || | |||| Sbjct 14017 TACCAGGCATTAT--TTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAAT 14074 Query 1890 TATGGCGTCCTAATGACCTGGCCCACATCGTCTTCCCCGTCCGACTATCGCCTTCGATAA 1949 |||| ||||||| || || |||||| |||||||| || | | || || || || | Sbjct 14075 TATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGA 14134 Query 1950 CTATACTTATTGGTCG-TAATGGCCGCGCAGCGG 1982 | ||||| | ||||| ||||||||||||||||| Sbjct 14135 CAATACTCTTGGGTCGTTAATGGCCGCGCAGCGG 14168 Score = 129 bits (142), Expect = 1e-26 Identities = 243/357 (68%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 957 CATACTGAAAATGCTCTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTAT 1016 |||||||||||||| ||||||||||| | |||||||| ||||||||||| ||| Sbjct 13084 CATACTGAAAATGCA---TTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1017 GCTACTTTGAAAGTGAGGAGTTATTTCTATGACTCAGTCACGAATTAATAAAGATTAAAT 1076 |||| ||| | | |||||||| ||||| || | |||||||||| ||| ||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1077 TTTATTACATGAGAACTTTGTACAAATGTTGTTTGCGTTAATGCGTCCCATAATACATAA 1136 |||||| ||||| | ||||| ||||||| | | | | ||||||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTG 13260 Query 1137 TTCACTGCTCTAATTACATTATTTAAACTAATGACACCTAAATTACTGAGAAACTTCAAA 1196 | || |||||||| | ||| || | |||||| |||||||| | ||| |||| Sbjct 13261 TCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATT 13320 Query 1197 ACTTGTGTCCTAAATACTCTTAAGAAACGACCAGTCTGAAGGTGTGAGTTCGTCCATATC 1256 || | ||||||||||||||||| ||| || | || | |||| ||| Sbjct 13321 ACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGATC 13380 Query 1257 CGGAAGTCCAGAAAACATTGGTGCATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAAT 1313 ||||| || ||| || ||| | |||| | ||||||||||||| ||||||| Sbjct 13381 TTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAAT 13437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8649685851872