Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_005321.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq19028 203 6e-49 >seq19028 Length=31091 Score = 203 bits (224), Expect = 6e-49 Identities = 263/356 (74%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 1646 TCCTCATTCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCATAGGAAGATAGTT 1705 ||||| | | | |||||||||| || || || || |||||||| | |||||| || Sbjct 13834 TCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTC 13893 Query 1706 GGGATTCCACCTTTAAT-TTGAATGGCTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCT 1764 || || ||||| || || || | ||| |||| ||| || ||||| ||| | || Sbjct 13894 GGTATCCCACCCTTTATCTTTACAGGCCTTCC-GTATTTTACCTTGCTGGACCAATTGCT 13952 Query 1765 TTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGAC 1824 |||||||||||| || |||||||||||||||||||| || || || |||| |||||||| Sbjct 13953 TTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGAT 14012 Query 1825 GTTATACCAAGCATCATTACTGTAT-ACTTTTGGGCTT-AGATCAAGATGTCCACACAAA 1882 ||||||||| |||| ||| || || | |||| || | ||| | ||| || || | Sbjct 14013 GTTATACCAGGCATTATT--TGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGG 14070 Query 1883 TAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCCGTACGACTATCACCTTCT 1942 ||||| |||||||| | ||||| |||||| ||| || || || | | ||||| || Sbjct 14071 TAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCA 14130 Query 1943 ATCACAATACTCTTGGGTC-TCCACGGCCGCGCAGCGGCACCACTCACGTTCTCAG 1997 || |||||||||||||||| | | ||||||||||||||| | || || || |||| Sbjct 14131 ATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Score = 196 bits (216), Expect = 8e-47 Identities = 313/436 (72%), Gaps = 13/436 (3%) Strand=Plus/Plus Query 954 CACACAGAGAATGCTTTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTAT 1013 || || || ||||| ||||| |||||| | |||||||| |||||| || ||| Sbjct 13084 CATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1014 GCTACTTTGAAGATCAGG-ATCTATTTCTATGATTCTGT-TCAGAATTAATAAAGATTGA 1071 |||| ||| || || | | ||||| ||||| ||| ||| |||||||||| ||||| Sbjct 13141 TGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTGA 13198 Query 1072 ATTTTATTATATGAGAATGTGTTACATATTCTGTTTTCTCCAATACATCCCATAATACA- 1130 |||||||| |||| | | ||||| |||||| ||| | ||||| |||||||| Sbjct 13199 ATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACAT 13258 Query 1131 TGATTACATGCTCTAATTACATTGTTAATACTAATTACACCCATATTATCTAAATATTTC 1190 || |||| |||||||| | ||||||||||||||| ||||| | |||||| ||||| Sbjct 13259 TGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTC 13317 Query 1191 A-TACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCA 1249 | |||| ||| ||||||||||||||||| | ||| |||| |||| ||||||| Sbjct 13318 ATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1250 GATCTGGAAGATCAGAAAACACTGGTGTATTCCCAATGCTTTCCTCAGGTTGTGGTTGAA 1309 ||||| |||| | || ||| | ||| | || | | |||||||||||||||||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1310 TTGTATTTGGATCGTTATGATGYC-GTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTTGG 1368 | | ||||| || || ||| | || || | ||| |||||| | ||| ||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGTTGA 13495 Query 1369 TTATCTTGAAATATAG 1384 |||||||||||||| Sbjct 13496 GGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8691270880006