Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_005330.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq19028 145 1e-31 >seq19028 Length=31091 Score = 145 bits (160), Expect = 1e-31 Identities = 458/696 (66%), Gaps = 39/696 (6%) Strand=Plus/Plus Query 1584 TTTTCCTCTTTGTCTAGGAAGTCTTTATAGCAGGCCCCCTCTCCAGGATTGCATAGCACG 1643 |||||||| | | ||||| |||||||||| || ||||||||||| | | | Sbjct 13831 TTTTCCTCCTCG---AGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1644 ATTGAAGGGACCCCACCTTCAATCAAACGAGGCTTTCCGTACTTGCAGTTTGTCTG--CC 1701 |||| || | |||||| | ||| |||| ||||||| || | ||| ||| || Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTT-ACCTTG-CTGGACC 13945 Query 1702 ATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACTTTAGGTAATGCGGAGCGA 1761 | || ||||||||| | | |||||| |||| |||||| ||||||||| ||| Sbjct 13946 AATTGCTTTGGGCCCCCATAAACTCTTTAAAGTG------CTTTAGATAATGCGGATCGA 13999 Query 1762 CGTCATCAATGACGTTATACTCCACTTGATCAGAATATACCTTTGAGTTGAAATCCAGAT 1821 ||| |||||||| ||||||| | | || ||||| | || || ||||| | || Sbjct 14000 CGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAAT 14059 Query 1822 GGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCCCACATCGTCTTGCCAGTTCGAG 1881 | || | | |||||||||||| ||||| | ||| |||||| ||||| || |||| || Sbjct 14060 GACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAG 14119 Query 1882 AACCACCTTCAACAATTAAACTTATAGG-CCTCAATGGCCGCGCAGCGGAACCCCTCCCA 1940 | |||| |||| | | ||| | || | | |||||||||||||||| | |||| | Sbjct 14120 ACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCT---A 14176 Query 1941 AAATAATCATCGGCCCACTCTTGCATCTCGTCTGGCACGTCAGTGAATGAGGAGAGTCGA 2000 | || ||| | ||||| ||| ||| || |||| || || | | Sbjct 14177 ACATTTTCAGCTGCCCA-----GCA-CTCAATTG--------TTGAAGGAAGAACAACTA 14222 Query 2001 AACGGAGGGGCCCATGGCTCCGGAGCCTTTGCA--AAGATCCTATCTAAATTACTATTTA 2058 || ||| | | || || |||| ||| || || | |||||| || | || Sbjct 14223 AAAGGACTAACATAAGGTTCAGGAG--GGGGCATGAATATTCGATCTAATTTTGGAACTA 14280 Query 2059 GATTGTGAAACTGGAATAGGAACTTTTCCGGCAACTTCTCCCGGATTATCTGCAAG-GCG 2117 ||| ||| | || ||||| |||||| | |||| || || | || || | ||| || Sbjct 14281 TATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAAT-AGAAAGCGCT 14339 Query 2118 ATTTCTTTGGAAGGGGCGTTCAAGGCTTCTGCGGCAGCGTCGTTAGCTGTCTGGCAACCG 2177 ||| | || | || | || |||||||| | | || || | ||| || |||| Sbjct 14340 TCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCT 14399 Query 2178 CCTCTAGCACTTCTACCGTCGATCTGGAATTCCCCCCACTCGAGAGT-ATCTCCGTCCTT 2236 ||||||||| || || ||||| || || | ||||| ||| | || ||| | ||| || Sbjct 14400 CCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCG-GTGTAATCACAGTCTTT 14458 Query 2237 TTCGATGTAGGACTTAACGTCGGACGAGGATTTAGC 2272 ||||||| |||||| || || || |||||||| Sbjct 14459 CGCGATGTATTTCTTAACATCTGAAGATGATTTAGC 14494 Score = 91.5 bits (100), Expect = 2e-15 Identities = 395/623 (63%), Gaps = 49/623 (8%) Strand=Plus/Plus Query 912 GAATCACACGGAGAATGCTTTGTTACTGTACATGGCATGTACTCATGCCTCTAACCCTGT 971 || ||| || || ||||| ||||| ||| || | |||||||| ||||| ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 972 GTATGCAACGCTTAAGATTCGGATCTATTTCTACGATTCGATAACCAATTAATAAAATTT 1031 ||| || | | | || | ||||| || || || | |||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1032 GAATTTTATATCATGATCTTCAAGTACATA----GTTTACATAGG--CTTTGTCAGTGGC 1085 ||||||||| ||||||| ||||||||||| |||| | | | ||| | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1086 AAAGCGAACAGCTCTAATTACATTATTAAGGGAAATTACACCTAATTGGTCTAAGTACAT 1145 | | ||||||||||| | ||| |||| ||| ||||||||| ||||||| | | Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1146 CATTACAAGGCGTCTAAG----CCTAATCAAA--TAAGTCGTTCCAGAAGCTGTCAGAGA 1199 ||||||| | | ||| | ||| ||| || |||| || | || | || Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCG-----GAGGACGTAAACGA 13371 Query 1200 AGTCGTCCAGACTTGGAAGTTCAGGTAGGCCTTGTGGAGACCCAATACTTTCCTGAGGCT 1259 |||| || | |||||| ||| | || ||||| ||| || | | ||||| ||| | Sbjct 13372 ----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTT 13427 Query 1260 GTGGTTGAACCTTATCTGTATGTGGTACACTCTGGTCCTCG----TGTACGGCAGGTCCT 1315 ||||||||| | || ||||| | | | ||| ||| ||| | | | | Sbjct 13428 GTGGTTGAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATT 13487 Query 1316 CTACGTTGTACATCTTGAAATACAGGGG-ATTTGTTATCTCCCAGATAT----------- 1363 | |||| ||||||||||| || | | ||| ||||| |||| Sbjct 13488 GTG-GTTGAGGATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGT 13546 Query 1364 --------AGACGCCATTCTCTGCCTGATGTGCAGTGATGAATTCCCCGGTGCGTGAATC 1415 ||||||||||| || || || ||||||||| ||||||| |||||| ||| Sbjct 13547 AAACGACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATC 13606 Query 1416 CATGGCCGGAGCAGTTAAGGTGTAGGTATATGGAGCAGCCGCACTGTATGTCCACTCGTC 1475 |||| || || ||| ||| | | | |||| || || || || | | ||| | ||||| Sbjct 13607 CATGACCAGAACAGCTAATATTTTTGAATATTGAACATCCACAAGGCAGGTCTAGTCGTC 13666 Query 1476 TACGCCTGATGGCTCTCTTCTTG 1498 | | ||||| |||||||||| Sbjct 13667 TTCTTCTGATTTGTCTCTTCTTG 13689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8448158407838