Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_005348.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq19028 361 1e-96 >seq19028 Length=31091 Score = 361 bits (400), Expect = 1e-96 Identities = 1056/1614 (65%), Gaps = 117/1614 (7%) Strand=Plus/Plus Query 963 GAATCATACAGAGAATGCGTTGTTATTGTATATGGCATGTACTCATGCTTCTAACCCAGT 1022 || |||||| || ||||| ||||| |||||| | |||||||| ||||| || || Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1023 GTATGCTACCCTTAAAATACGCATCTATTTCTATGATGCAGTTACGAATTAATAAATATT 1082 ||| ||| | | || ||||| ||||| ||||| || | |||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1083 AAATTTTATTTCATGATTTTCTGATACATCAATAATGTTT--TCAAGAATATTGTACAAT 1140 |||||||||||||||| ||| |||||| | ||||| |||| | |||| | ||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCAC--TGTTTGCTCAATTACATTGAATAAT 13254 Query 1141 ACATGGTTGACTGCCCTAATGATATTATTAATAGAAATTACATTCAAATTATCTAAATAT 1200 |||| || || || ||||| ||||| |||||| ||| ||| || |||||| || Sbjct 13255 ACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1201 TTAATTATTTGGGTCTTAAAGACCCTTAAGAAATGACCAGTCTGAGGCCGTAAGGTCGTC 1260 || |||| | ||||| || ||||||||| ||| |||| ||||| ||| Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1261 CAGATCTGGAAGTTCAGATAACACTTGTGAATCCCCAACTCTTTCCTGAGGTTGTGGTTG 1320 | ||||| |||||| || || ||||||| || || ||||| |||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1321 AACCTGATTTGGTCTGATATCATGTCGTGGTTCCTGTTGAATG-GTCGG-CTGA---TGT 1375 || | ||||| | || |||||| ||| || |||| || || |||| ||| Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCG--GTT---GTCGAATTTGTTGGTCTGAGATTGT 13489 Query 1376 GTTTTATTATCTTGAAATATAG-----GGGATTGTTGAGCTCCCAGATA----------- 1419 | || | |||||||||||||| | | | || ||||| ||| Sbjct 13490 GGTTGAGGATCTTGAAATATAGAAACAGCTAATATT----TCCCAAATATGTGGTTGACG 13545 Query 1420 --AAC------ACGCCACTCTGAGCTTGAAGAGCAGTGATGTGTTCCCCTGTGCGTAAAT 1471 ||| |||||| || ||||| |||||||||||| |||||||||||||| || Sbjct 13546 TAAACGACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATAT 13605 Query 1472 CCATGGTTGGTGCAGTTAATGTGTAGATAGTATGAGCACCCGCAGTTGAGGTCTACTCGT 1531 ||||| | ||| |||| | | | ||| || || || ||||||| |||| Sbjct 13606 CCATGACCAGAACAGCTAATATTTTTGAATATTGAACATCCACAAGGCAGGTCTAGTCGT 13665 Query 1532 CTACGCCTGATCGGTTTCTTCTTG--------------------GCTTGTTTG---TGGA 1568 || | ||||| || |||||||| | ||| || || | Sbjct 13666 CTTCTTCTGATTTGTCTCTTCTTGATATCCGGATATGTAAATGAGGTTGCTTTCCTTGTA 13725 Query 1569 GAACCT---TG-----ATTGGCGT---------TGGA-GAACAATGGCTCTGTGAGGGTG 1610 || | || ||||| | || | ||| ||||| | ||||| |||| Sbjct 13726 TAATGTCTATGCATCCATTGGGATAACATTTCCTGCACGAATAATGGTTGTGTGATGGTG 13785 Query 1611 ACGAAGGTCGCATTTTTTACTGCCCAAGCCTTCAGTGCTCTGtttttttCCTCGTCTAGA 1670 ||| ||||| | | | |||| || | | | ||||||||||| || || Sbjct 13786 TAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGG 13845 Query 1671 AATTCCTTATATGATGAAGTTGCCCCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCT 1730 || || ||||| ||||| | || |||||||| | ||| || | || || || || Sbjct 13846 AACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCC 13905 Query 1731 TTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATC 1790 || || | || ||| ||||||||||| ||||| ||| | |||||||||||||| Sbjct 13906 TTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATA 13965 Query 1791 AGCTCTTTAAAATGCTTTAAATAATGTGGGTCGACATCATCAATGACGTTATACCATGCG 1850 | ||||||||| ||||||| |||||| || ||||| | |||||||| ||||||||| || Sbjct 13966 AACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCA 14025 Query 1851 TTATTGGAGTACACCTTTGGGCTTAAGTCTAGGTGCCCACATAAATAATTATGTGGACCC 1910 ||||| || || | || | || |||| || || |||| ||||||||||| || Sbjct 14026 TTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCT 14085 Query 1911 AGAGAACGGGCCCATACAGTTTTGCCGGTCCGACTGTCACCCTCTAAGACTATACTCTTG 1970 | ||| | ||||| | || || || || | | |||||||| | ||| ||||||||| Sbjct 14086 AAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTG 14145 Query 1971 GGTC-TCCATGGCCGCGCAGCGGAATCTCTTATATTATCTGCCACCCACTCTTCAAGT-T 2028 |||| | ||||||||||||||| ||| || | ||| || || |||| |||| | | Sbjct 14146 GGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAATTGT 14205 Query 2029 CGTCTG--GAACTTGAGTAAAAGNNNNNNNNNNNNNNGGGGATACATATACTTCAGGAGG 2086 | | |||| | ||||| || ||||| ||||||||| Sbjct 14206 TGAAGGAAGAAC--AACTAAAA---------------GGACTAACATAAGGTTCAGGAGG 14248 Query 2087 TTCCTGGAAGATTCTATCTAAATTGGATTTTAAATTATGATATTGAAATATATAATCTTT 2146 | ||| |||| |||||| || | || ||||||||||||||||| | | | | Sbjct 14249 GGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGC 14308 Query 2147 TGGGAGTTTTTCTTTAATTATAGCTAAAGCAGCTTCAGTTGAACCTGCATTTAATGCCTC 2206 ||| | ||||||| |||| |||| | || ||||| |||| ||| |||| || || Sbjct 14309 TGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTC 14368 Query 2207 GGCGGCTGCGTCGTTAGCTGTTTGGCAGCCTCCTCTAGCAGATCTGCCGTCAATTTGGAA 2266 || | | | || || | ||| || | |||||||||||||||| || || ||||| || Sbjct 14369 TGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAA 14428 Query 2267 TTCTCCCCATTCGAGAGT-GTCTCCGTCCTTATCGATATAGGACTTGACGTCGGAGCTGG 2325 | ||||| ||| | || || | ||| || |||| || ||| || || || | Sbjct 14429 ATTGCCCCAGTCG-GTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATG 14487 Query 2326 ATTTAGCTCCCTGTACATTCGGATGGAAATGTGCTGACCGGGTTGGGGAT--ACCAGGTC 2383 ||||||| || | || || ||| ||||| || | | | |||| | | || Sbjct 14488 ATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTG-CTAGTATTAGGATGGATGATATC 14545 Query 2384 GAAGAATCGTTGATTTGTGCAGTTGT-ATTTACCCTCGAATTGGATAAGCACGTGGAGAT 2442 |||| || | ||| | | |||| || || |||||||| ||||| | ||| || Sbjct 14546 GAAGTGTCTAGGGTTTCT-AAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTAT 14604 Query 2443 GATGTTCCCCATCTTCGTGGAGTTCTCTACAGATTTTAATGAATTTTTTATTTG 2496 || ||||||||| | ||| |||| ||||| | ||| || |||||||| Sbjct 14605 GAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCTAA--AACAGTTTATTTG 14656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8758353950410