Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_005850.1 Length=2560 Score E Sequences producing significant alignments: (Bits) Value seq19028 143 4e-31 >seq19028 Length=31091 Score = 143 bits (158), Expect = 4e-31 Identities = 240/344 (70%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 1463 TCGAGGAAGTTTTTATAGCTAGTCCCCTCACCTGGATTGCACAGCACGATTGACGGGATT 1522 |||||||| | ||||||||| | ||| |||||||||| | ||||| ||| || Sbjct 13840 TCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATC 13899 Query 1523 CCACCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTGGTTTGCCAGTCCCTTTGGGCC 1582 ||||| || || | || ||| |||||||||| ||| | ||| | ||||||||| Sbjct 13900 CCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCC 13959 Query 1583 CCTATCAATTCTTTCCAATGCTTTAATTTCAAATAATTAGGGCTTATGTCATCAGTGACG 1642 || || || ||||| | |||||| | ||||| || | || |||| ||| | Sbjct 13960 CCCATAAACTCTTTAAAGTGCTTT------AGATAATGCGGATCGACGTTATCAATGATG 14013 Query 1643 TTATATTCCA--CGTCATTAGAATATACCCTATTATTAAAATCAAGATGGCCACTTAGAT 1700 ||||| ||| | | ||| ||||| | ||||||| ||||| | ||| || | ||| | Sbjct 14014 TTATA--CCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGT 14071 Query 1701 AGTTATGTTTACCTAATGACCTGGCCCACATTGTCTTTCCGGTTCGACTATCGCCTTCTA 1760 | |||||| ||||| || || |||||| |||||| || |||| | || || || | Sbjct 14072 AATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAA 14131 Query 1761 TGATGATACTGATCGGTC-TTTCTGCCCGCGCAGCGGCACCCCT 1803 ||| ||||| | |||| || || ||||||||||||| |||| Sbjct 14132 TGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCT 14175 Score = 98.7 bits (108), Expect = 2e-17 Identities = 359/552 (65%), Gaps = 65/552 (12%) Strand=Plus/Plus Query 773 GAATCATACGGAGAACGCTTTGTTATTGTATATGGCATGTACACACGCCTCTAATCCTGT 832 || |||||| || || || ||||| |||||| | || || || ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 833 ATATGCTACGTTGAAAATACGTAGTTATTTTTATGACTCTATTTCGAATTAATAAAGGTT 892 |||| ||| ||| || ||| |||||||||||||| | | || |||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 893 AAATTTTATTGAATGTCTCTCTAGCACA--CA----------ATTTACATATGGTTTGTC 940 ||||||||| ||| || || ||| || | |||||| || | | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACAT-TGAATAATA 13255 Query 941 CGTTGCGAAACGAACTGCTCTAATTACATTGTTAAGTGAAACAACCCCTAATTGATCTAA 1000 | ||| || |||||||| | |||||||| || ||| |||||| | ||||| Sbjct 13256 CATTG-----TCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAA 13310 Query 1001 A---TACAGTAACACTCTATCCCTAAAT-CTATTTA-AATATGT-CGTCCCAGAAGCTTG 1054 | | || | |||| || ||||| || || | || | || ||| || | | | Sbjct 13311 AAATTTCA-TTACACGAAAT--TTAAATACTCTTAAGAAAACGTATGTCGGAGGA-CGTA 13366 Query 1055 AACTAATGTCGTCCAGATTTGGAAATTCAGGTAGGCCTTGTGTAGATTCAACGCCTTCCT 1114 ||| | |||| ||| | ||| || ||| | || ||||| ||||||| ||||||| Sbjct 13367 AACGA-----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCT 13421 Query 1115 CAGGTTGTAGTTGAACCGGATTTGGATGGTGTAGATTCTGGTCGTTGTGTA--TACTGGG 1172 |||||||| |||||| || ||||| | | | |||| || ||||| | | | || Sbjct 13422 CAGGTTGTGGTTGAATCGAATTTGTA---TTTCGATTATGTCGGTTGTCGAATTTGTTGG 13478 Query 1173 TCCTCCACT----TGGATTATCTTGAAATAGAG-GGGATTTGGAACCTCCCAAATA---- 1223 || | | | || ||||||||||| || | | | ||||||||| Sbjct 13479 TCTGAGATTGTGGTTGAGGATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTG 13538 Query 1224 --------AAA-------ACGCCATTCATTGCTTGATGAGCAGTGATGGGTTCCCCTGTG 1268 ||| ||||||||||| ||||| |||||||||||| |||||||||| Sbjct 13539 GTTGACGTAAACGACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTG 13598 Query 1269 CGTGAATCCATG 1280 ||| ||||||| Sbjct 13599 CGTATATCCATG 13610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8080290851268