Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_006384.1 Length=2735 Score E Sequences producing significant alignments: (Bits) Value seq19028 217 3e-53 >seq19028 Length=31091 Score = 217 bits (240), Expect = 3e-53 Identities = 297/410 (72%), Gaps = 5/410 (1%) Strand=Plus/Plus Query 1591 GAGGGTGATGAATTCTGCATTCTTTATTGCCCAGTTTTTAAGTGCGCTGTTCCTCTCTTC 1650 || |||| |||||||||||| | | | ||| ||||| | | | || | || || Sbjct 13779 GATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTC 13838 Query 1651 GTCCAAGAATTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGAT 1710 || | ||| |||||||| || || || || |||||||| | |||||| || || || Sbjct 13839 CTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTAT 13898 Query 1711 TCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGC 1770 ||||| || || | | || | ||||| || ||||| ||| | |||||||| Sbjct 13899 CCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGC 13958 Query 1771 CCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATA 1830 |||||| || |||||||||||||||||||| || || || |||| |||||||| |||||| Sbjct 13959 CCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATA 14018 Query 1831 CCAAGCATCATTATTGTAT-ACTTTTGGGCTT-AGATCAAGATGTCCACACAAATAATTG 1888 ||| |||| || ||| || | |||| || | ||| | ||| || || | ||||| Sbjct 14019 CCAGGCATTAT--TTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTA 14076 Query 1889 TGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCTGTACGACTATCACCTTCTATCACA 1948 |||||||| | ||||| |||||| ||| || ||||| | | ||||| || || ||| Sbjct 14077 TGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACA 14136 Query 1949 ATACTTTTGGGTC-TCCAAGGCCGCGCAGCGGCACCACTCACATTTTCAG 1997 ||||| ||||||| | | ||||||||||||||| | || |||||||||| Sbjct 14137 ATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Score = 154 bits (170), Expect = 3e-34 Identities = 309/441 (70%), Gaps = 23/441 (5%) Strand=Plus/Plus Query 957 CACACCGAGAATGCTTTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTAT 1016 || || || ||||| ||||| |||||| | |||||||| |||||| || ||| Sbjct 13084 CATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1017 GCTACTTTGAAGATCAGG-ATCTATTTCTACGATTCTGT-TCAGAATTAATAAAGATTAA 1074 |||| ||| || || | | ||||| || || ||| ||| |||||||||| ||| | Sbjct 13141 TGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTGA 13198 Query 1075 ATTTTATTATACTTGAATCTTCC-GTA--TCAATTGTTCCTTCTAATACATTGTACAATA 1131 |||||||| | ||| | ||| ||| || | |||| || | ||||||| | |||| Sbjct 13199 ATTTTATTTCA--TGA-TATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1132 CATGAGACATTGCTCTAATTACATTATTGATGCTAATAACTCCTAAATTGTCTAAATACT 1191 ||| | |||||||| | ||| || || |||||||| ||||| ||||||| | | Sbjct 13256 CATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1192 TAAT-ACATTGATATTTAAATACTCTTAAGAAACGCGAGGTCTGAGGATGTAAACGAGTC 1250 | || ||| || |||||||||||||||||||| | ||| ||||| ||||||||||| Sbjct 13316 TCATTACAC-GAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1251 CAAACTCGGCAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTAATTG 1310 | | | || | || ||| | ||| | || | ||||||||||||| ||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1311 AATTGGACTTGTATTGTGATTATGTCGTGTTTCGTCAGAA----ATGGTCTCTCGTCGTG 1366 ||| | | ||||||| |||||||||| ||| ||| ||| |||||| | ||| Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCG-GTT--GTC-GAATTTGTTGGTCTGAGATTGTG 13490 Query 1367 GTTGGTTATCTTGAAATATAG 1387 |||| |||||||||||||| Sbjct 13491 GTTGAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8640089306918