Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_006874.1 Length=2777 Score E Sequences producing significant alignments: (Bits) Value seq19028 228 1e-56 >seq19028 Length=31091 Score = 228 bits (252), Expect = 1e-56 Identities = 372/533 (70%), Gaps = 27/533 (5%) Strand=Plus/Plus Query 965 TCATACTGAGAATGCGTTGTTGTTGTATATGGCTTGTACTCATTATTCCAATCCCGTGTA 1024 ||||||||| ||||| |||| ||||||| || |||||| || ||||| || || Sbjct 13083 TCATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1025 CGCTACATTGAAAATACGCATCTATTTCTATGATGCAGTGACAAATTAATAAATATTAAA 1084 ||| ||| || ||||| ||||| ||||| || |||||||||||||||| || Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAA 13199 Query 1085 TTTTATTTCATGATCCTCCAAAACCTGGAGTGTATTTACAAGTACATCATACAATACATG 1144 |||||||||||||| || | || | | ||| | ||| ||||| | ||||||| Sbjct 13200 TTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATT 13259 Query 1145 ATCAACTGCCCTAATTACAGTATTAATTGAAATAACACCTAATCTATCTAAATATCTGAG 1204 || || || ||||| | | | ||||| |||||||||||||| |||||| || | | Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1205 GACCTGAATTCTAAATACCCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGAC 1264 || ||| | ||||||| ||||||||| ||| |||| ||||| |||| || Sbjct 13320 TACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGAT 13379 Query 1265 CTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTGAGGTTGTGGTTGAATCT 1324 |||||||||||| ||| |||||||| |||||||||||| |||||||||||||||| Sbjct 13380 CTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCG 13439 Query 1325 TATCTGGATGTTGATGATGTC-GTGGTTCATGTTGAATGGCCTTATTTCGTGGCTGGTGA 1383 || || || | ||| ||||| || || | ||| ||| || | | |||| || || Sbjct 13440 AATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGTTGAGGA 13498 Query 1384 TCGTGAAATAGAGGGGATTGTT--TATCTCCCAGA-------------TAAAC------A 1422 || ||||||| | | | | | ||| ||||| | ||||| | Sbjct 13499 TCTTGAAATATA-GAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTAGA 13557 Query 1423 CGCCATTCTGTGCCTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATG 1475 |||||||| || || ||||||||||| ||||||||||||| ||||||| Sbjct 13558 CGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATG 13610 Score = 212 bits (234), Expect = 1e-51 Identities = 260/354 (73%), Gaps = 1/354 (0%) Strand=Plus/Plus Query 1656 TTTCCTCGTCCAGAAATTCTTTATAGGACGACGTTGGGCCTGGATTGCATAGGAAGATTG 1715 ||||||| || || || ||||||||| || || || || |||||||| | |||||||| Sbjct 13832 TTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTG 13891 Query 1716 TGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCC 1775 | || || || || || || | | ||| | ||||| ||| ||||| ||| | | Sbjct 13892 TCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGC 13951 Query 1776 TCTGCGCTCCCATAAATTCCTTAAAGTGCTTTAGATAATGCGGGTCTACGTCATCAATGA 1835 | || || |||||||| || ||||||||||||||||||||||| || |||| |||||||| Sbjct 13952 TTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGA 14011 Query 1836 CGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTGAGATCAAGATGGCCACATAAAT 1895 ||| ||||| |||| ||| || | || | | ||| | ||| || |||| | Sbjct 14012 TGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGT 14071 Query 1896 AGTTATGTGGTCCCAATGACCTGGCCCACATTGTCTTTCCGGTACGACTATCACCCTCGA 1955 | ||||||||||| || || || |||||| |||||| || || | | |||||||| | Sbjct 14072 AATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAA 14131 Query 1956 TTACAATACTATTCGGTC-TCCACGGCCGCGCAGCGGCATCCATCACGTTCTCA 2008 | |||||||| || |||| | | |||||||||||||||||| | || || ||| Sbjct 14132 TGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCA 14185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8771149208190