Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_007965.1 Length=2557 Score E Sequences producing significant alignments: (Bits) Value seq19028 143 4e-31 >seq19028 Length=31091 Score = 143 bits (158), Expect = 4e-31 Identities = 408/616 (66%), Gaps = 61/616 (10%) Strand=Plus/Plus Query 777 GAATCACACGGAGAATGCTCTGTTATTGTATATGGCATCTACTCATGCTTCTAATCCTGT 836 || ||| || || ||||| |||| |||||| || |||||||| ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 837 GTATGCTACCTTGAAAATTCGTAGTTATTTTTATGACTCCATTTCGAATTAATAAAGATT 896 ||| ||| ||| || || |||||||||||||| | || |||||||||| ||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 897 AAATTTTATTGAATGTCTTTCGAGCACA--CAAT----------TTACATATGGTTTATC 944 ||||||||| ||| ||| || ||| || | |||||| || | || Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACAT-TGAATAATA 13255 Query 945 CGTTGCGAAACGAACAGCTCTAATGACATTGTTAAGCGAAACAACACCTAATTGATCTAA 1004 | ||| | |||||||||| | |||||||| || |||||||||| | ||||| Sbjct 13256 CATTGTCTA-----CAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAA 13310 Query 1005 ATA---CATTAAAACTAAATCTTTAAAT-CTATTTA-AATATGTC-GTCCCAGAAGCTTG 1058 | | ||||| | | |||| |||||| || || | || | || ||| || | | | Sbjct 13311 AAATTTCATTACA-CGAAAT--TTAAATACTCTTAAGAAAACGTATGTCGGAGGA-CGTA 13366 Query 1059 AACTGATGTCGTCCAGATTTGGAAGTTCAGGTATGCTTTGTGTAGACTCAACGCCTTCCT 1118 ||| || |||| ||| | |||||| ||| | |||||||| ||| ||| ||||||| Sbjct 13367 AAC-GA----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCT 13421 Query 1119 CAGGTTGTAGTTGAACCGTATTTGGATGGTGTATATTCTGGTTGTGGTGTATATTGGCTC 1178 |||||||| |||||| || ||||| || | ||| |||||| | | | |||| || Sbjct 13422 CAGGTTGTGGTTGAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGG-TC 13480 Query 1179 CTCCACT----TGGATTATCTTGAAATAGAG-GGGATTTGGAACCTCCCAGATA------ 1227 | | | || ||||||||||| || | | | ||||| ||| Sbjct 13481 TGAGATTGTGGTTGAGGATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGT 13540 Query 1228 ------AAA-------ACGCCATTCATTGCTTGATGAGCAGTGATGGGTTCCCCTGTGCG 1274 ||| ||||||||||| ||||| |||||||||||| |||||||||||| Sbjct 13541 TGACGTAAACGACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCG 13600 Query 1275 TGAATCCATGGTTTCTGCAGTTGATGTGTACGTAAATTGAACAGCCACAGTCCAGGTCTA 1334 | ||||||| ||| | || | | | | |||||||| ||||| |||||||| Sbjct 13601 TATATCCATGACCAGAACAGCTAATATTTTTGAATATTGAACATCCACAAGGCAGGTCTA 13660 Query 1335 ACCTTCTCCGTCTAAT 1350 | ||| | ||| || Sbjct 13661 GTCGTCTTCTTCTGAT 13676 Score = 104 bits (114), Expect = 4e-19 Identities = 231/344 (67%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 1467 TCGAGGAAGTCTTTATAGCTAGCCCCCTCTCCTGGATTGCACAGCACGATTGAGGGTATT 1526 |||||||| ||||||||||| | || |||||||||| | ||||| ||||| Sbjct 13840 TCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATC 13899 Query 1527 CCTCCTTTAGTTTGAACTGGCTTCCCGTATTTACAGTTGGACTG--CCAGTCCTTTTGGG 1584 || || || | | || ||| | |||||||| ||| ||| ||| | |||||| Sbjct 13900 CCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTG--CTGGACCAATTGCTTTGGG 13957 Query 1585 CCCCTATCAATTCTTTCCAATGCTTTAATTTCAAATAATTAGGGCTTATGTCATCAATGA 1644 |||| || || ||||| | |||||| | ||||| || | || |||||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTT------AGATAATGCGGATCGACGTTATCAATGA 14011 Query 1645 CGTTATATTCGACGTCATTCGAATAGACTCTGCCATTAAAGTCAAGATGTCCACTAAGAT 1704 |||||| | | | ||| ||||| | | | ||| || || | ||| || | || | Sbjct 14012 TGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGT 14071 Query 1705 AATTATGTTTACCTAATGAACGGGCCCACATTGTTTTTCCAGTTCGACTATCTCCTTCGA 1764 |||||||| ||||| || | |||||| ||| || || |||| | || || || | Sbjct 14072 AATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAA 14131 Query 1765 TGATGATACTTATCGGTC-TATCTGCCCGCGCAGCGGCACCCCT 1807 ||| ||||| | |||| | || ||||||||||||| |||| Sbjct 14132 TGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCT 14175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8070694306314