Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008236.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq19028 239 8e-60 >seq19028 Length=31091 Score = 239 bits (264), Expect = 8e-60 Identities = 568/848 (67%), Gaps = 29/848 (3%) Strand=Plus/Plus Query 1636 TTTTAATGCACTATTCTTTTCTTCATCAAGATATTCTATATAGGAGGCAGTTGGTCCTGG 1695 ||||||| | |||| ||||| || || || | ||| ||||| || ||| || || || Sbjct 13815 TTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGG 13874 Query 1696 ATTGCAAAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCATACTTTGT 1755 |||||| | ||||||||| || || ||||| || || | | ||| | || || ||| Sbjct 13875 ATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTAC 13934 Query 1756 GTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGCGG 1815 ||||| ||| | | |||||||||||| || || ||||||||||||||||| ||||| Sbjct 13935 CTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGG 13994 Query 1816 GTCTACGTCATCAATGACGTTGTACCATGCATCATTGCTGTAGACTTTTGGGCTCAAGTC 1875 || |||| |||||||| ||| ||||| |||| ||| || | ||| |||| || Sbjct 13995 ATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATC 14054 Query 1876 AAGATGACCACACAAATAGTTGTGTGGTCCCAGTGATCTTGCCCACATTGTCTTCCCTGT 1935 | |||||| || | || || |||||||| | |||||||||||| |||||||||||| Sbjct 14055 TAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGT 14114 Query 1936 CCTGCTATCACCCTGTATGACTATACTTACAGGTC-TCCATGGCCGCGCAGCGGCATTGG 1994 || ||||||| ||||| ||||| |||| | |||||||||||||||||| Sbjct 14115 TCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCC 14174 Query 1995 CTATGTTTTCAGAGACCCATTCTTCAAGTTCTTCTGGAACTTGATTAAAAGAAGATGAAA 2054 | ||||||| |||| |||| ||| || || ||||| || Sbjct 14175 TAACATTTTCAGCTGCCCAGCACTCAA-------------TTG-TTGAAGGAAGAACAAC 14220 Query 2055 TAAAAGGAGAAACATAAATATCTATAGGAGGTGTAAAGATCCTATCTAAATTACTATTTA 2114 |||||||| ||||||| || ||| || | || || | |||||| || | || Sbjct 14221 TAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTA 14280 Query 2115 AATTATGAAACTGTAAAACATAATCTTTGGGAGC-TTTCTCCCTTAATATATTGAGGGCC 2173 ||||||| | || ||| | || ||||| || ||| | | ||||| || || | | Sbjct 14281 TATTATGATATTG--AAATAGAAACTTTGCTGGCATTTTTTCTCTAATA-ATAGAAAG-C 14336 Query 2174 GAAACTT---TGGACCCTGAGTTGATTGCCTCGGCATACGCGTCGTTTGCAGATTGGCAA 2230 | ||| | || | | | || || ||| | | || |||| | || || Sbjct 14337 GCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAA 14396 Query 2231 CCTCCTCTAGCTGATCGTCCATCGATCTGGAAAACTCCAGAATCAAGGATGTCTCCGTCT 2290 ||||||||||| |||||||||||||| || ||| || | || | || | |||| Sbjct 14397 CCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCT 14456 Query 2291 TTCTCCATGTAGGTTTTGACATCAGACGAGCTTTTAGCTCCCTGAATGTTTGGATGGAAA 2350 ||| | ||||| | || ||||| || || |||||| || | |||||| ||| | Sbjct 14457 TTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TA 14515 Query 2351 TGTGCTGACCTACT-TGGGGATG--TGAGATCGAAGAATCTATTATTTTTGCATTGGAAT 2407 |||| || ||| | | ||||| ||| ||||||| |||| ||| | |||| Sbjct 14516 TGTGGTG--CTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCC 14573 Query 2408 TTTCCTTCGAACTGGATGAGAACATGCAGGTGAGGATTCCCATCGTTGTGTAGTTCTCTG 2467 || |||||||| || || || |||| ||| | |||||| | |||| |||| Sbjct 14574 TTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGA 14633 Query 2468 CAGATTCT 2475 |||| ||| Sbjct 14634 CAGACTCT 14641 Score = 187 bits (206), Expect = 4e-44 Identities = 265/367 (72%), Gaps = 7/367 (2%) Strand=Plus/Plus Query 960 CATACAGAGAACGCCTTGTTATTGTATATGGCATGTACTCATGCCAGTAACCCTGTGTAT 1019 ||||| || || || ||||| |||||| | |||||||| ||| ||||| ||| Sbjct 13084 CATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1020 GCTACTTTGAAAATCAGGATCTATTTTTACGATTCTGT-TCAGAATTAATAAATATTGAA 1078 |||| ||| || | | |||||||| || ||| ||| ||||||||||||||||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTGAA 13199 Query 1079 TTTTATATCATGAAATTCCTGTACATACATTGTGTGTTGTAGTTTATTATATAATACATG 1138 |||||| |||||| |||| |||||| || ||| || | | | ||| ||||||||| Sbjct 13200 TTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATT 13259 Query 1139 ATCTACTGCTCTAATTACATTATTAATAGATATTACACCTAAATTATCTAAATACTGCAT 1198 ||||| |||||||| | ||| |||||| || |||||||| |||||| | | ||| Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1199 GACTTGCTTCTTAAATACTCTCAAGAAACGCCATGTCTGAGGCTGTAAGCGAGTCCAGAC 1258 || | ||||||||||| |||||| ||||| |||| |||| ||||||| || Sbjct 13320 TACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGAT 13379 Query 1259 TTCGAAAATCA-GAAAGCATTTGTGAATTCCCAGTTGAGTTCTCAGGTTGTAGTTGAATT 1317 | ||| | | |||||| |||||||| ||||| | |||||||||| ||||||| Sbjct 13380 CTTGAAGTTGAGGAAAGC-TTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATC 13438 Query 1318 GAATCTG 1324 |||| || Sbjct 13439 GAATTTG 13445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8742359878185