Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008267.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq19028 250 4e-63 >seq19028 Length=31091 Score = 250 bits (276), Expect = 4e-63 Identities = 290/390 (74%), Gaps = 1/390 (0%) Strand=Plus/Plus Query 1630 GAGGGTGATGAATTCTGCATTATGAAGAGACCAATTTTTAAGTGCGATGTTTTTAGGTTC 1689 || |||| ||||||||||||||| | |||||||||||| | | || ||||| || Sbjct 13779 GATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTC 13838 Query 1690 GTCTAAAAACTCTTTATATGAAGATGTGGGTCCAGCATTACATAAAAAGATGGTCGGTAT 1749 || | ||||||||||| || || || |||| ||| || || ||||| |||||||| Sbjct 13839 CTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTAT 13898 Query 1750 CCCGCCTTTAATTTGAATGGGTCTACCATACTTTGTATTGCTTTGCCAGTCCATCTGGGC 1809 ||| || || || | | || || || || ||| ||||| ||| | | ||||| Sbjct 13899 CCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGC 13958 Query 1810 CCCCATAAACTCTTTAAAGTGCTTTAGGTAATGCGGATCGACGTCATCAATGACGTTATA 1869 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| Sbjct 13959 CCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATA 14018 Query 1870 CCATGCGTCATTTGAGTAAACCCTAGGATTGAGATCTAGATGGCCGCACAAGTAATTGTG 1929 ||| || | |||||| |||| || ||| | ||||| ||| ||||| | |||||| || Sbjct 14019 CCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATG 14078 Query 1930 CCTACCAAGCGATCTAGCCCACATGGTTTTACCTGTACGACTATCACCTTGTAACACCAG 1989 || | ||||| |||||| || || ||||| | | ||||| | | || | Sbjct 14079 TGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAAT 14138 Query 1990 ACTCTTTGGTC-TTAATGGCCGCGCAGCGG 2018 |||||| |||| |||||||||||||||||| Sbjct 14139 ACTCTTGGGTCGTTAATGGCCGCGCAGCGG 14168 Score = 158 bits (174), Expect = 2e-35 Identities = 362/545 (66%), Gaps = 25/545 (5%) Strand=Plus/Plus Query 989 GAATCATACAGAGAATGCTCTGTTATTGTACATGGCATCTACGCATGCCTCTAACCCTGT 1048 || |||||| || ||||| |||| ||| || || || ||||| ||||| ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1049 GTATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAATGTT 1108 ||| ||| ||| || || | ||||||||||| || ||||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1109 GAATTTTATTTCATAATCTGGTTGTACATCAATAGTGCGTTCTAGCACTTTAAACAAGAC 1168 |||||||||||||| || | ||||||| | || | || | || || || || || Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1169 ATGGTCTACAGCTCTAATTACATTATTAATTGAAATTACACCTAAATTATTCAAGTATTT 1228 || ||||||||||||||| | ||| ||||| ||| |||||||| | || |||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1229 -AATACATTGAGTCTTAAAGACTTTTAAGAAAAGCCCAGTCGGAGGGTGTAAGTAAGTCC 1287 | |||| || ||||| ||| ||||||||| |||||||| |||| ||||| Sbjct 13317 CATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1288 AAACTTGGAACGTCAGAAAACACCGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGA 1347 | | ||| | || ||| ||| | || | ||||||||||||||||||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1348 ACTGCAGCCGTATTGTTATCACGTCGTGGTTCGTGTTGAACGGCCGGCTGTGATGGCTGA 1407 | | | ||||| || | |||| ||| || || | | | ||| ||| Sbjct 13436 ATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTGGTTGA 13495 Query 1408 GTATCTTGAAATAGAG-GGGATTTTGAATCTCCCAAATA-------------------TA 1447 | ||||||||||| || | | || ||||||||| || Sbjct 13496 GGATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTA 13555 Query 1448 GACGCCATTCCTGGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTAG 1507 |||||||||| | ||||| ||||||||||| ||||||||||||| |||||||| || Sbjct 13556 GACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGACCAG 13615 Query 1508 CACAG 1512 |||| Sbjct 13616 AACAG 13620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726458211504