Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30]
33,873 sequences; 833,080,760 total letters
Query= NC_008267.1
Length=2762
Score E
Sequences producing significant alignments: (Bits) Value
seq19028 250 4e-63
>seq19028
Length=31091
Score = 250 bits (276), Expect = 4e-63
Identities = 290/390 (74%), Gaps = 1/390 (0%)
Strand=Plus/Plus
Query 1630 GAGGGTGATGAATTCTGCATTATGAAGAGACCAATTTTTAAGTGCGATGTTTTTAGGTTC 1689
|| |||| ||||||||||||||| | |||||||||||| | | || ||||| ||
Sbjct 13779 GATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTC 13838
Query 1690 GTCTAAAAACTCTTTATATGAAGATGTGGGTCCAGCATTACATAAAAAGATGGTCGGTAT 1749
|| | ||||||||||| || || || |||| ||| || || ||||| ||||||||
Sbjct 13839 CTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTAT 13898
Query 1750 CCCGCCTTTAATTTGAATGGGTCTACCATACTTTGTATTGCTTTGCCAGTCCATCTGGGC 1809
||| || || || | | || || || || ||| ||||| ||| | | |||||
Sbjct 13899 CCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGC 13958
Query 1810 CCCCATAAACTCTTTAAAGTGCTTTAGGTAATGCGGATCGACGTCATCAATGACGTTATA 1869
||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||
Sbjct 13959 CCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATA 14018
Query 1870 CCATGCGTCATTTGAGTAAACCCTAGGATTGAGATCTAGATGGCCGCACAAGTAATTGTG 1929
||| || | |||||| |||| || ||| | ||||| ||| ||||| | |||||| ||
Sbjct 14019 CCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATG 14078
Query 1930 CCTACCAAGCGATCTAGCCCACATGGTTTTACCTGTACGACTATCACCTTGTAACACCAG 1989
|| | ||||| |||||| || || ||||| | | ||||| | | || |
Sbjct 14079 TGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAAT 14138
Query 1990 ACTCTTTGGTC-TTAATGGCCGCGCAGCGG 2018
|||||| |||| ||||||||||||||||||
Sbjct 14139 ACTCTTGGGTCGTTAATGGCCGCGCAGCGG 14168
Score = 158 bits (174), Expect = 2e-35
Identities = 362/545 (66%), Gaps = 25/545 (5%)
Strand=Plus/Plus
Query 989 GAATCATACAGAGAATGCTCTGTTATTGTACATGGCATCTACGCATGCCTCTAACCCTGT 1048
|| |||||| || ||||| |||| ||| || || || ||||| ||||| |||||
Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136
Query 1049 GTATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAATGTT 1108
||| ||| ||| || || | ||||||||||| || ||||||||||||| ||
Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196
Query 1109 GAATTTTATTTCATAATCTGGTTGTACATCAATAGTGCGTTCTAGCACTTTAAACAAGAC 1168
|||||||||||||| || | ||||||| | || | || | || || || || ||
Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256
Query 1169 ATGGTCTACAGCTCTAATTACATTATTAATTGAAATTACACCTAAATTATTCAAGTATTT 1228
|| ||||||||||||||| | ||| ||||| ||| |||||||| | || ||||
Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316
Query 1229 -AATACATTGAGTCTTAAAGACTTTTAAGAAAAGCCCAGTCGGAGGGTGTAAGTAAGTCC 1287
| |||| || ||||| ||| ||||||||| |||||||| |||| |||||
Sbjct 13317 CATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375
Query 1288 AAACTTGGAACGTCAGAAAACACCGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGA 1347
| | ||| | || ||| ||| | || | |||||||||||||||||||
Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435
Query 1348 ACTGCAGCCGTATTGTTATCACGTCGTGGTTCGTGTTGAACGGCCGGCTGTGATGGCTGA 1407
| | | ||||| || | |||| ||| || || | | | ||| |||
Sbjct 13436 ATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTGGTTGA 13495
Query 1408 GTATCTTGAAATAGAG-GGGATTTTGAATCTCCCAAATA-------------------TA 1447
| ||||||||||| || | | || ||||||||| ||
Sbjct 13496 GGATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTA 13555
Query 1448 GACGCCATTCCTGGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTAG 1507
|||||||||| | ||||| ||||||||||| ||||||||||||| |||||||| ||
Sbjct 13556 GACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGACCAG 13615
Query 1508 CACAG 1512
||||
Sbjct 13616 AACAG 13620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8726458211504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |