Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008283.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq19028 260 2e-66 >seq19028 Length=31091 Score = 260 bits (288), Expect = 2e-66 Identities = 308/416 (74%), Gaps = 1/416 (0%) Strand=Plus/Plus Query 1600 TGATGGTGACGAAGGTCGCATTTTTTAGTGCCCAAGATTTCAATGCATTATTTTTGTCCT 1659 |||||||| ||| ||||| | | | |||| ||| ||| | ||||||| |||| Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1660 CGTCAAGGTATTCTTTATATGACGAGGTAGGACCAGGATTGCAGAGGAAGATAGTGGGAA 1719 | || ||| | |||||||| || ||||||||||||||||| | |||||| || || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1720 TTCCGCCTTTAATTTGAATTGGCTTGCCGTATTTTGTGTTGCTTTGCCAGTTCCTCTGGG 1779 | || || || || | | ||| | ||||||||| ||||| ||| || || |||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1780 CCCCCATAAACTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGT 1839 ||||||||||||||||||||||||||||||| || || ||||||| |||||||| ||| | Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1840 ACCAGGCGTCATTGTTGTATACCTTGGGGCTCAAGTCTAGATGTCCACAGAGATAATTAT 1899 ||||||| | ||| || | || |||| |||| ||| || || || ||||||| Sbjct 14018 ACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTAT 14077 Query 1900 GGAGGCCCAATGATCTAGCCCACATTGTTTTGCCTGTACGACTCTCACCTTCTAACACAA 1959 | | || || ||||| |||||| ||| || ||||| | | |||||| || | |||| Sbjct 14078 GTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAA 14137 Query 1960 TACTAATGGG-CCTCCATGGCCGCGCAGCGGCATCCTTCACATTTTCACTAGCCCA 2014 |||| |||| | | |||||||||||||||||||| | ||||||||| ||||| Sbjct 14138 TACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCA 14193 Score = 181 bits (200), Expect = 2e-42 Identities = 369/548 (67%), Gaps = 25/548 (5%) Strand=Plus/Plus Query 963 TCACACTGAAAATGCATTGTTGTTGTATATGGCATGTACTCATGCATCTAATCCTGTGTA 1022 ||| |||||||||||||||| ||||||| | |||||||||||||||||||| || Sbjct 13083 TCATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1023 CGCTACATTGAAAATTCGTATATACTTCTACGACAATGTAACAAATTAATAAAGGTTAAA 1082 ||| ||| || || | || || || || | |||| |||||||||||| || || Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAA 13199 Query 1083 TTTTATTATATGCAACTGCTTTGCGTACACTGTATGTTCAAGTACATCCCACAAAACATA 1142 ||||||| ||| | | | | | |||||| || |||| ||||| | || |||| Sbjct 13200 TTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATT 13259 Query 1143 ATTCACAGCTCTAATTACATTGTTTATCGACACAATTCCTAAATTGGATAAATAGCTAAT 1202 | ||||||||||| | |||||| || | || ||||| | |||| | | || Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1203 TACATTGTTCTTAAATACTCTTAAGAAATGCCAAGTCTGAGGACGTAAACGAGTCCAAAT 1262 |||| |||||||||||||||||| | ||| |||||||||||||||||| || Sbjct 13320 TACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGAT 13379 Query 1263 GTGGAAGATTAAAAAACACTTGTGAATCCCCAGCGCTTTCCTCAAGTTGTGGTTGAATTG 1322 | |||| | | ||| ||||||| ||| | ||||||| ||||||||||||| | Sbjct 13380 CTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCG 13439 Query 1323 GATTTGCACTTCCATGTAGTC-CATGTCGGTGTTGAACGGTCTGGTGCTGTGCCTCAGCA 1381 ||||| | ||| || ||| ||||| ||| |||||| |||| | || | Sbjct 13440 AATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGTTGAGGA 13498 Query 1382 CCTTGAAATAGAG-GGGATTTGGAACCTTCCAAATA-------------------TAGAC 1421 ||||||||| || | | | | ||||||| ||||| Sbjct 13499 TCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTAGAC 13558 Query 1422 GCCATTCTGCGCCTGAGCTGCAGTGATGTACTCCCCTGTGCGAAAATCCATACCCATGAC 1481 ||||||| ||| || ||||||||||| ||||||||||| | |||||| ||| || Sbjct 13559 GCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGACCAGAAC 13618 Query 1482 AGTTGATA 1489 || | ||| Sbjct 13619 AGCTAATA 13626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8688072031688