Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008316.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq19028 257 3e-65 >seq19028 Length=31091 Score = 257 bits (284), Expect = 3e-65 Identities = 310/418 (74%), Gaps = 3/418 (1%) Strand=Plus/Plus Query 1580 GTGAGGGTGAAGAATTCTGCATTCTTTAGAGTCCACGCCTTTAATGCAGCATTCCTATCC 1639 |||| |||| ||||||||||||| | | || ||| |||||| | ||| | ||| Sbjct 13777 GTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCC 13836 Query 1640 TCGTCCAGATATTCTTTATAGCTGGAGTTGGGACCAGGATTGCAGAGGAAGATAGTGGGA 1699 || || || | |||||||||||||| | |||||||||||||| | |||||| || || Sbjct 13837 TCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGT 13896 Query 1700 ATTCCTCCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGG 1759 || || || || || | | || | ||||| ||| ||||| ||| | |||||| Sbjct 13897 ATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGG 13956 Query 1760 GCTCCCATGAACTCTTTAAAATGCTTTAGGTAGTGGGGATCGACGTCATCGATGACGTTG 1819 || ||||| ||||||||||| |||||||| || || |||||||||| ||| |||| ||| Sbjct 13957 GCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTA 14016 Query 1820 TACCAAGCATCATTACTGTAGACCTTTGGACTTAGATCCAAGTGTCCACATAAATAGTTG 1879 ||||| |||| ||| || | || | | | ||| || || || |||| || || Sbjct 14017 TACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTA 14076 Query 1880 TGTGGGCCTAAACATCTGGCCCACATTGTCTTCCCTGTTCTACTCTCTCCCTCTATCACA 1939 ||||| |||||| |||| |||||| |||||||||||||||| ||| ||||| || ||| Sbjct 14077 TGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACA 14136 Query 1940 ATACTCTTTGGCCG-CCATGGCCGCGCAGCGGCACTAACT-ACATTCTCAGCAGTCCA 1995 |||||||| || || ||||||||||||||||| | || ||||| ||||| | ||| Sbjct 14137 ATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCA-TCCCTAACATTTTCAGCTGCCCA 14193 Score = 174 bits (192), Expect = 3e-40 Identities = 302/433 (70%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 945 CATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTAT 1004 |||||||| ||||| |||| ||||||| | |||||||| |||||||| || ||| Sbjct 13084 CATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1005 GCGACTCTGAAAATTCGGATCTATTTCTATGATTCGATACAAAATTAATAAAGATTGAAT 1064 ||| ||| || || | ||||| ||||| || ||||||||||| ||||||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1065 TTTAATATATTTGTTTCCTGTACATCAATTGTTCCGATTAA-TACATTGTTTAATACATG 1123 |||| | || ||| ||||||| | |||| | | || ||||||| |||||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTT-TGCTCAATTACATTGAATAATACATT 13259 Query 1124 AGTAACAGCTCGAATTACATTATTTATTGTTACAATACCCAACTTCTCTAAATACTT-AA 1182 ||||||| ||| | ||| || || | | || ||| || |||||| | || | Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1183 TACATTGACTACTAAAGACTCTTAAGAAACGCGATGTCTGAGGATGTAAATGAGTCCAGA 1242 |||| || |||| |||||||||||| ||||| ||||| ||||| |||||| || Sbjct 13320 TACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGA 13378 Query 1243 TCTGGAAGTTCAGAAAACACTGATGTATCCCCAATGCTTTCCTCAGGTTGTGATTGAATC 1302 ||| |||||| || ||| | || | || | | |||||||||||||| ||||||| Sbjct 13379 TCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATC 13438 Query 1303 GGATTTGTACATGTATTATGTCGTGGTTCGTGTTGAAGGGTCTGCTGTGGTGATGCATTA 1362 | ||||||| | ||||||||| ||| || |||||| | ||| | | | Sbjct 13439 GAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTGGTTGAGGA 13498 Query 1363 TCTTGAAATATAG 1375 ||||||||||||| Sbjct 13499 TCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8739161063740