Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008329.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq19028 248 2e-62 >seq19028 Length=31091 Score = 248 bits (274), Expect = 2e-62 Identities = 505/739 (68%), Gaps = 31/739 (4%) Strand=Plus/Plus Query 1607 TGAGGGTGATGAATTCTGCATTCTTTAATGCCCAATCTTTTAATGCTGAATTTTTATCCT 1666 ||| |||| |||||||||||| | || | ||||| ||||||| |||||| |||| Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1667 CATTCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATACTTGGGA 1726 | | | | |||||||||| || || || || |||||||| | |||||| | || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1727 TTCCACCTTTAATTTGAACTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGG 1786 | ||||| || || | || ||| | ||||| || ||||| ||| | ||||||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1787 CCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTAT 1846 ||||||| || |||||||||||||||||||| || || || |||| |||||||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1847 ACCAAGCATCATTACTGTAT-ACTTTTGGGCTT-AGATCAAGATGTCCACACAAATAATT 1904 |||| |||| ||| || || | |||| || | ||| | ||| || || | ||||| Sbjct 14018 ACCAGGCATTATT--TGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATT 14075 Query 1905 GTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCTGTACGACTATCACCTTCTATCAC 1964 |||||||| | ||||| |||||| ||| || ||||| | | ||||| || || || Sbjct 14076 ATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGAC 14135 Query 1965 AATACTTTTGGGTC-TCCAAGGCCGCGCAGCGGCACCACTCACATTCTCAGAAACCCACT 2023 |||||| ||||||| | | ||||||||||||||| | || ||||| |||| |||| Sbjct 14136 AATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGC 14195 Query 2024 CTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAAAGAAATGGACAAACAAAAACCT 2083 |||| ||| | ||| |||||| || ||| |||| |||| || | Sbjct 14196 ACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTT 14241 Query 2084 CTAAAGGA-GGTGCA--AAAATCCTATCTAAGTTAGAGTTTAAATTATGAAATTGTAAAA 2140 | |||| || ||| || || | |||||| || | || ||||||| |||| ||| Sbjct 14242 C---AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG--AAA 14296 Query 2141 CATAATCTTT--AGGAGCTAACTCCTTAATTACTCTAAGAGCCTCAGC-CTTACTGCCGC 2197 | || |||| || | || |||| | ||| || || | || || || Sbjct 14297 TAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGC 14356 Query 2198 TGTTAATTGCCTGGGCGTAAGCATCATTGGCTGATTGTTGACCCCCTCTTGCAGATCGTC 2257 |||| || | || | ||||||| | || ||| ||| ||||| |||||||||| Sbjct 14357 ACTTAA-CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTC 14415 Query 2258 CGTCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGGTAGGACTTGA 2317 | ||||| ||||| | ||||||||| | || | ||| ||| | | ||| ||| | Sbjct 14416 CATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAA 14475 Query 2318 CGTCGGAGCTGGATTTAGC 2336 | || || |||||||| Sbjct 14476 CATCTGAAGATGATTTAGC 14494 Score = 217 bits (240), Expect = 3e-53 Identities = 316/438 (72%), Gaps = 9/438 (2%) Strand=Plus/Plus Query 967 GAATCACACTGAGAATGCTCTTTTGTTGTACATGGCATGTACTCATGCCTCTAATCCCGT 1026 || ||| ||||| ||||| |||||||| || | |||||||| |||||||| || Sbjct 13080 GACTCATACTGAAAATGCA---TTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1027 GTATGCTACTTTGAAAGTAAGGAGTTATTTCTATGACTCCGTTACGAATTAATAAATATT 1086 ||| |||| ||| | | | |||||||| ||||| || | |||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1087 GAATTTTATTATATGAGAATGTGTTACATATTCTGTTTTTTCCAATACATCCCATAATAC 1146 |||||||||| |||| | | ||||| |||||| || | ||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1147 A-TGATTACATGCTCTAATTACATTGTTAATACTAATTACACTCAAATTATCTAAATATT 1205 | || |||| |||||||| | ||||||||||||||| |||| || |||||| ||| Sbjct 13257 ATTGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1206 TCA-TACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAACGAGTC 1264 ||| |||| ||| ||||||||||||||||| | ||| |||| ||||||||||| Sbjct 13316 TCATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1265 CAGATCTGGAAGATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTG 1324 | ||||| |||| | || ||| | ||| | || | |||||||||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1325 AATTGTATTTGGATCGTTATGATGTC-GTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTT 1383 ||| | ||||| || || ||||| || || | ||| |||||| | ||| || Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGTT 13493 Query 1384 GGTTATCTTGAAATATAG 1401 | |||||||||||||| Sbjct 13494 GAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694469728324