Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008373.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq19028 309 5e-81 >seq19028 Length=31091 Score = 309 bits (342), Expect = 5e-81 Identities = 752/1127 (67%), Gaps = 93/1127 (8%) Strand=Plus/Plus Query 958 CATACTGAGAATGCTCTGTTATTGTATATGGCATGTACGCATGCTAGTAATCCAGTGTAT 1017 |||||||| ||||| |||| |||||| | || ||||| |||||| || ||| Sbjct 13084 CATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1018 GCTACCTTGAAAATCAGGATCTATTTCTATGATTCTGTACAAAATTAATAAAGATTGAAT 1077 ||| ||| || | | ||||| ||||| |||| ||||||||||| ||||||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1078 TTTATTATACTTGAGAATGTTGTT--TCAATTGTCCCTTCTAATACATCATACAGTACAT 1135 |||||| | ||| | | || || | ||| || | ||||| | | ||||| Sbjct 13201 TTTATTTCA--TGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACAT 13258 Query 1136 GTGAAATTGCTCTAATTACATTGTTGATACTAATCACTCCTAAATTCG--CTAAATATTT 1193 | |||||||| | |||||| |||||||| || ||||| ||| ||||| |||| Sbjct 13259 TGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAA--TCGGTCTAAAAATTT 13316 Query 1194 CAT-ACATTGATATTTAAATACTCTTAAGAAATGCGAGGTCTGAGGATGTAAAAGAGTCC 1252 ||| ||| || |||||||||||||||||||| | ||| ||||| ||||| |||||| Sbjct 13317 CATTACAC-GAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1253 AGATCCGGCAGGTTAGAAAACATTGGTGTATCCCCAGCGCTTTCCTCAGGTTGTAATTGA 1312 |||| | || | || ||| || ||| | ||| | ||||||||||||| |||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1313 ATTGGATTTGGACGGTTATGATGTCGTGGTTCCTCCGGAATGGTCTCTCT-AG---GTGT 1368 || | ||||| | || |||||| ||| || | | || ||| || ||| Sbjct 13436 ATCGAATTTGTATTTCGATTATGTCG--GTTGT--CGAATTTGTTGGTCTGAGATTGTGG 13491 Query 1369 TGGGGTATCTTGAAATATAG-----GGGATTGTTGA---------TTGTCCAGGTA---- 1410 | | | |||||||||||||| | | | || | || | ||| Sbjct 13492 TTGAGGATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACG 13551 Query 1411 --TATACGCCATTCTCTGCTTGAGCCGCAGTGATGAGTTCCCCTGTGCGTAAATCCATGT 1468 || ||||||||| ||||| ||||||||| |||||||||||||| ||||||| Sbjct 13552 ACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGA 13611 Query 1469 ---GATGCGC-AATCAAGTCCAAAATAGTAAGAGCATCCACAAGGTAGATCAACTCTACG 1524 || || ||| | | |||| | || ||||||||||| || || | || | Sbjct 13612 CCAGAACAGCTAAT--ATTTTTGAATATT--GAACATCCACAAGGCAGGTCTAGTCGTCT 13667 Query 1525 TCTGCGAACTGGTCTCCTCTTCGCTAT-----TTTGT-------GTTG------------ 1560 ||| | | | ||||| |||| | ||| | ||| |||| Sbjct 13668 TCTTCTGATTTGTCTCTTCTT-GATATCCGGATATGTAAATGAGGTTGCTTTCCTTGTAT 13726 Query 1561 ---GACTTTG-----ATTGGTA---------CTTGA-GTACAATGGCCCTGTGAGGGTGA 1602 | || || ||||| | || | | | ||||| ||||| |||| Sbjct 13727 AATGTCTATGCATCCATTGGGATAACATTTCCTGCACGAATAATGGTTGTGTGATGGTGT 13786 Query 1603 CGAATGTTGCATTTTTTAATGCCCAGTTTCTGAGTGCAGAATTCTTATCCTCGTCCAAGT 1662 |||| |||||| | || | ||| ||| | | | | ||| || ||||| || | | Sbjct 13787 AGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGA 13846 Query 1663 ACTCTTTATATGATGAAGTTGGTCCTGGATTGCATAGGAAGATTGTTGGGATACCTCCTT 1722 |||||||||| ||||| || || |||||||| | ||||||||| || || || || | Sbjct 13847 ACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCT 13906 Query 1723 TAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGA 1782 | || | | || | ||||| || ||||| ||| | | |||||||||||| | Sbjct 13907 TTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAA 13966 Query 1783 ATTCTTTAAAGTGCTTTAGATAGTGGGGATCTACGTCATCAATGACGTTGTACCAGGCAT 1842 | |||||||||||||||||||| || ||||| |||| |||||||| ||| |||||||||| Sbjct 13967 ACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCAT 14026 Query 1843 CATTAGAATACACCTTGGGACTCAAGTCCAGGTGACCACATAAATAGTTATGTGGACCCA 1902 ||| ||||| | || | |||| || | ||||| |||| || |||||||| || | Sbjct 14027 TATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTA 14086 Query 1903 AAGAACGAGCCCACATTGTCTTGCCGGTTCTACTCTCGCCCTCGATTACAATACTATTGG 1962 |||| | |||||| |||||| || |||||| ||| ||||| || |||||||| |||| Sbjct 14087 AAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGG 14146 Query 1963 G-CCTAAAAGGCCGCGCAGCGGCACCCATTACATTTTCTGCAGCCCA 2008 | | | || ||||||||||||||| || | |||||||| || ||||| Sbjct 14147 GTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCA 14193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8668878941780