Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008377.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq19028 279 9e-72 >seq19028 Length=31091 Score = 279 bits (308), Expect = 9e-72 Identities = 655/977 (67%), Gaps = 35/977 (4%) Strand=Plus/Plus Query 1628 TGAGGGTGATGAATGTTGCATTTTTAATTGCCCAGGCTTTCAATGCAGCATTTTTATCTT 1687 ||| |||| |||| |||||| | | | ||| ||| ||| | |||||| || | Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1688 CTTCGAGATATTCTTTATAGGAAGCCGTTGGCCCAGGATTGCAGAGGAAGATTGTTGGGA 1747 | ||||| | ||||||||| | || || ||||||||||| | ||||||||| || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1748 TACCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTCTGCCAGTCCCTCTGGG 1807 | || || || || | | || | ||||| || ||||| ||| | || |||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1808 CCCCCATGAATTCTTTAAAGTGTTTGAGATAATGCGGGTCAACATCATCTATGACGTTAT 1867 ||||||| || ||||||||||| || ||||||||||| || || | ||| |||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1868 ACCATGCTTCATTTGAATAGACCCTTGGGCTAAGATCTATATGACCACATAGATAATTAT 1927 |||| || | ||||||||| | | | | ||||| |||||| ||||| ||||||| Sbjct 14018 ACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTAT 14077 Query 1928 GTGGGCCTAAGGACCTAGCCCACATTGTCTTCCCTGTTCTACTATCACCCTCAACAACTA 1987 |||| ||||| || || |||||| |||||||||||||||| |||||||||| || | Sbjct 14078 GTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAA 14137 Query 1988 TACTTTGAGGTC-TCCAGGGCCGCGCAGCGGCACCAACGACGTTCTCAGCTGCCCATTCT 2046 |||| | |||| | | ||||||||||||||| | || || |||||||||| Sbjct 14138 TACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCC----- 14192 Query 2047 TCTAGTTCTTCGGGAACATTATTAAAAGAAGAAGACGAAAAAGGAGAAACATAAACTTCG 2106 || || ||| || || |||||| | ||||||| ||||||| ||| Sbjct 14193 ---AGCACT------CAATTGTTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCA 14243 Query 2107 GGCGGAGCCTGAAAGATTCTATCTAAGTTTGACTTTAAATTATGATATTGGAAAATATAA 2166 || || | | || |||| |||||| |||| || |||||||||||| ||||| || Sbjct 14244 GGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG--AAATAGAA 14301 Query 2167 TCTTT--AGGGAGTTTTTCCCTAATAATTGCCATAGCAGCATCAGCGGAACCTGCATTCA 2224 |||| || | |||||| |||||||| | | || | ||| || ||| | | Sbjct 14302 ACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTA 14361 Query 2225 ATGCCTCTGCTGCAGCGTCGTTAGCAGTCTGGCAGCCTCCCCTAGCACTTCTTCCGTCGA 2284 | || ||||| | | || || | || || | ||||| |||||| || ||| |||| Sbjct 14362 ACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGA 14421 Query 2285 CCTGGAACTCTCCCCATTCCAGGGTG---TCGCCGTCCTTGTCGATGTAGGACTTGACGT 2341 || || | ||||| || |||| || | ||| || ||||||| ||| || | Sbjct 14422 TTTGAAAATTGCCCCAGTC---GGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACAT 14478 Query 2342 CCGAGCTAGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTACT-TGGGGA- 2399 | || || ||||| || | ||| || ||| ||||| || ||| | | ||| Sbjct 14479 CTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTG--CTAGTATTAGGAT 14535 Query 2400 -GACCAGGTCGAAGAATCTCTGATTTGTGCAGTTGT-ATTTGCCCTCGAACTGGATAAGC 2457 || | |||||| ||| | ||| | | |||| ||||| ||||| || ||||| Sbjct 14536 GGATGATATCGAAGTGTCTAGGGTTTCT-AAATTGTGCCTTGCCTTCGAATTGAATAAGG 14594 Query 2458 ACATGGAGATGTGGTTCCCCATTCTCATGTAACTCACGGCAGATTTTAATATATTTTTTA 2517 ||||| ||| |||||||| || ||| || | |||| | ||| | | |||| Sbjct 14595 GCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCTAAAACA--GTTTA 14652 Query 2518 TTTGTAGGGGTTTGTAAATCTTTGAGTTGCCCTAATGCGTCTTCTTTAGACAGAGAGCAT 2577 |||| ||| | | ||| | ||| |||| | ||||||| |||| ||| Sbjct 14653 TTTGAAGGACAAGAAACCTGTTTCAAGTGCTCTAAGATTTGATCTTTAGGAAGAGGACAT 14712 Query 2578 TTTGGGAAAGTGAGAAA 2594 ||||| || || ||||| Sbjct 14713 TTTGGAAATGTAAGAAA 14729 Score = 120 bits (132), Expect = 5e-24 Identities = 258/383 (67%), Gaps = 7/383 (2%) Strand=Plus/Plus Query 988 GAATCATACGGAGAATGCTTTACTACTGTATATGGCATGTACCCATGCGTCAAATCCAGT 1047 || |||||| || ||||| || | |||||| | || ||||| || ||||| || Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1048 ATATGCGAGTCTTAAAATACGAATGTATTTCTATGATTCAGTCAGCAATTAATAAATATC 1107 |||| | | | | || ||| | ||||| ||||| || ||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1108 GAATTTTATTTCATGACTTTCTGTTACATCTATTGTATTTAGTAGTAC--TGAATACAGA 1165 |||||||||||||||| ||| |||||| | ||| | | ||| |||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAAT-- 13254 Query 1166 ACATGGGCAACTGCTCTAATCACTAAATTAATTGAAATTACACCCAAATTATTTAAGTAT 1225 |||| | | || |||||||| | ||||| ||| ||||| || | ||| || Sbjct 13255 ACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1226 TTTAGAACCTGTGTTCTAAATACCCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTC 1285 || | || | | ||||||| ||||||||| ||| |||| ||||| ||| Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1286 CAGACCCTGAAGTTGAGAAAACACTTGTGAATCCCCAATGCCTTCCGAAGGTTGTGGTTG 1345 | || | |||||||||| ||| ||||||| || | |||||| |||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1346 AACCGGATTTGGACATCTATTAT 1368 || || ||||| | || ||||| Sbjct 13435 AATCGAATTTGTATTTCGATTAT 13457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8819131424865