Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008494.1 Length=2569 Score E Sequences producing significant alignments: (Bits) Value seq19028 167 4e-38 >seq19028 Length=31091 Score = 167 bits (184), Expect = 4e-38 Identities = 260/365 (71%), Gaps = 14/365 (4%) Strand=Plus/Plus Query 1479 TCGAGGAAATCTTTATAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGAGGGGATC 1538 |||||||| ||||||||||||| | ||| |||||||| | | ||||| || ||| Sbjct 13840 TCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATC 13899 Query 1539 CCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTG--CCAGTTCTTTTGGG 1596 || || || || | || ||| |||||||||| | ||| ||| ||| || |||||| Sbjct 13900 CCACCCTTTATCTTTACAGGCCTTCCGTATTTT-ACCTTG-CTGGACCAATTGCTTTGGG 13957 Query 1597 CCCCTATGAGTTCTTTCCAGTGCTTTAACTTTAGATATTGCGGTGCGACGTCATCAATGA 1656 |||| || | ||||| ||||||||| |||| ||||| |||||| |||||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTA------GATAATGCGGATCGACGTTATCAATGA 14011 Query 1657 CGTTATACTCCACTTCATTCGAGTAGACCCTGTTATTGAAGTCCAAATGTCCACTGAGAT 1716 ||||||| | | ||| || || | | ||||| || || ||||| || | || | Sbjct 14012 TGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGT 14071 Query 1717 AATTATGTGGGCCTAAAGAACGAGCCCACATTGTTTTGCCTGTCCTTGATTCACCTTCCA 1776 |||||||||| |||||||| | |||||| ||| || ||||| || || ||||| || | Sbjct 14072 AATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAA 14131 Query 1777 CTATTATACTAATAGGTC-TCTCCGGCCGCGCAGCGGAACTCCGACCAAAATAGTCATCT 1835 | ||||| | |||| | ||||||||||||| | ||| | || || ||| || Sbjct 14132 TGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCA-TCC--CTAACATTTTCAGCT 14188 Query 1836 GCCCA 1840 ||||| Sbjct 14189 GCCCA 14193 Score = 93.3 bits (102), Expect = 7e-16 Identities = 111/150 (74%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 795 GAATCATACGGAGAACGCCCTATTATTGTATATGGCATGTACTCATGCCTCTAACCTTGT 854 || |||||| || || || ||| |||||||| | |||||||| ||||| | ||| Sbjct 13080 GACTCATACTGAAAATGC---ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 855 ATATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGATAATGAATTAATAAAATTT 914 |||| ||| ||| | || | ||||||||||| || |||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 915 GAATTTTATTTCATGATTTTCAAGTACATC 944 ||||||||||||||||| |||||||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATC 13226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8109080486130