Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_008517.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq19028 237 3e-59 >seq19028 Length=31091 Score = 237 bits (262), Expect = 3e-59 Identities = 305/417 (73%), Gaps = 3/417 (1%) Strand=Plus/Plus Query 1609 GAGGGTGATGAATCTCGCATTTTTTAAAGCCCAAAATTTTAAAGCTGAATTCTTTTCTTC 1668 || |||| |||| ||||| | |||| |||| |||||| ||| ||||| || Sbjct 13779 GATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTC 13838 Query 1669 GTCCAGGAACTCTTTATAACTGGAGTTGGGTCCTGGATTGCATAGGAAGATAGTGGGAAT 1728 || |||||||||||||| ||||| | || || |||||||| | |||||| || || || Sbjct 13839 CTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTAT 13898 Query 1729 TCCGCCTTTTATTTGAACTGGCTTCCCGTACTTTGTATTTGATTG-CCAGTCTCTTTGGG 1787 || || ||||| | || ||| | ||||| ||| || | | | ||| | ||||||| Sbjct 13899 CCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGG 13957 Query 1788 CCCCCATAAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCATCAATGACGTTAT 1847 |||||||||| ||||||||||||||||| || || ||||| |||| |||||||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1848 ACCAAACATCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTGT 1907 |||| ||| ||| || | || | | |||| |||||| || | ||||| | Sbjct 14018 ACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTAT 14077 Query 1908 GTGGTCCAAGTGACCTCGCCCACATCGTCTTCCCCGTCCTACTCTCACCCTCAATCACTA 1967 ||||||| | || || |||||| |||||||| || ||| |||||||||||| || | Sbjct 14078 GTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAA 14137 Query 1968 TACT-TACGGGCCTTAATGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCAG 2023 |||| | || | |||||||||||||||||||| ||| || || || |||||| Sbjct 14138 TACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAG 14194 Score = 84.2 bits (92), Expect = 4e-13 Identities = 244/373 (65%), Gaps = 11/373 (3%) Strand=Plus/Plus Query 968 TCATTCTGAGAATGCTTTGATGTTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTA 1027 |||| |||| ||||| ||| ||||| || | |||||||| ||||||||||| || Sbjct 13083 TCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1028 TGCTACGCTTAAGATTCGTATTTACTTCTACGATTCTGTAACCAACTGATATTAATAAAG 1087 | ||| | | | || | ||| || || || |||| | | ||||||||| Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTA------TCAAATTAATAAAT 13193 Query 1088 ATTAAATTTTATTAAATATGATTGTTCTACGTATACAATGTGATGTAATACATTCCATAA 1147 ||| ||||||||| || ||| ||| | || | || | | |||||| |||| Sbjct 13194 ATTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAA 13253 Query 1148 CACATAATCAACTGCTCCATTTACATTATTAATGCTGATAATGCCTAAATTATGTAAAAA 1207 |||| || || |||| | | | ||| ||||| || |||| ||||| | |||||| Sbjct 13254 TACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAA 13313 Query 1208 CTTAAATACTTGGGTCTTAAAGACCCTTAAAAAATGACCAGTCTGAGGCTGTGAGGTCGT 1267 || | ||| | ||||| || ||||| ||| ||| |||| || | || Sbjct 13314 TTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGT 13373 Query 1268 CCAGAT-TTGTAGACTTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGAT 1326 || ||| ||| || | |||||| |||||| | || | |||||||||||||| | Sbjct 13374 CCTGATCTTGAAG-TTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGT 13432 Query 1327 TGAATTGTACTTG 1339 ||||| | | ||| Sbjct 13433 TGAATCGAATTTG 13445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8707265121596