Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_009088.1 Length=2728 Score E Sequences producing significant alignments: (Bits) Value seq19028 239 8e-60 >seq19028 Length=31091 Score = 239 bits (264), Expect = 8e-60 Identities = 366/522 (70%), Gaps = 15/522 (3%) Strand=Plus/Plus Query 1583 GCATTCTTCACTGCCCAGTTTTTGAGTGCGGTGTTCTTTTCCTCCTCTAGAAATTCTTTA 1642 ||||| | || | ||| ||||| | | | || ||||||||||| || || |||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1643 TAACTGCTGATGGGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGA 1702 || ||| | |||||||||||||| | ||||||||| ||||| || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1703 ACTGGCTTCCCGTACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTA 1762 || ||| | ||||| || ||| ||| | |||||||||||||| ||||||||| Sbjct 13915 ACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTA 13974 Query 1763 AAGTGCTTGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTACTG 1822 |||||||| || | |||||||| |||| |||||||| ||||||||| || | || Sbjct 13975 AAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAA 14034 Query 1823 TACACCTTTGGACTAAGATCTAAGTGCCCACACAGATAGTTATGTGGGCCTAAAGACCTA 1882 || | || | | | |||||| || || || || || |||||||| |||||||| || Sbjct 14035 TAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTT 14094 Query 1883 GCCCACATTGTCTTCCCAGTACGACTATCTCCCTCAATTACTATACTTTGAGGTC-TCAG 1941 |||||| ||||||||| || | | || |||||||| || ||||| | |||| | | Sbjct 14095 GCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAA 14154 Query 1942 GGGCCGCGCAGCGGCGTCGACAACATTTTCCGACGCCCACTCTTCAAGTTCTTCTGGAAC 2001 |||||||||||||| || ||||||||| | ||||| |||| Sbjct 14155 TGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA------------- 14201 Query 2002 TTGATTGAAAGAAGAAGAGGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAATAT 2061 ||| ||||| |||||| | ||||||| ||||||||| | || || | ||||| Sbjct 14202 TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATAT 14260 Query 2062 CCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAA 2103 | |||| |||| | || ||||||| |||| | || ||| Sbjct 14261 TCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAA 14302 Score = 95.1 bits (104), Expect = 2e-16 Identities = 265/404 (66%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 963 ACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCT 1022 |||||||| ||||| ||||| ||| |||| ||| | | ||||| || || || | Sbjct 13117 ACTCATGCATCTAATCCTGTATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGT 13176 Query 1023 GTAACAAATTAATATTAATAAAGATCGAATTTTATTTCTGAATATTGATCTACATACATA 1082 ||| |||||||||| || || |||||||||||| ||||| | ||||| || Sbjct 13177 GTATCAAATTAATA------AATATTGAATTTTATTTCATGATATTCAAGTACATCCACT 13230 Query 1083 GTTTGTTCCAATTTATTATACAATACATGATCTACTGCTCTAATAATTGCGTTAAGTGAG 1142 ||||| || | | ||| | ||||||| ||||| ||||||||||| ||||| Sbjct 13231 GTTTGCTCAATTACATTGAATAATACATTGTCTACAGCTCTAATAATATTGTTAATACTA 13290 Query 1143 ATTACACCCAGATTTTTGAGATACTTGAGCACTTGGGTTTTGAATACCCTTAAGAAAAGA 1202 || ||||| | | | | | || | || | ||| ||||| |||||||||| Sbjct 13291 ATAACACCTAATCGGTCTAAAAATTTCATTACACGAAATTTAAATACTCTTAAGAAAACG 13350 Query 1203 CCAGTCGGAGGGTGTAAGGTCGTCCAGATTCGGAAGGTCAGAAAACACTTGCGCACTCCC 1262 |||||||| |||| |||| ||| |||| | || ||| ||| | | | Sbjct 13351 TATGTCGGAGGACGTAAACGAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTC 13410 Query 1263 AGAGCTCTCCGAAGGTTGTAGTTGAATTGGATCCTGACTGTTATTATGTCCATGTTGCTC 1322 || | ||| ||||||| ||||||| | || | | |||||||| |||| || Sbjct 13411 AGTTCCTTCCTCAGGTTGTGGTTGAATCGAATTTGTATTTCGATTATGTC--GGTTG-TC 13467 Query 1323 GAAT---AAGGACGGTCCTCGTGGCTGAGGATTTTGAAATAGAG 1363 |||| || | | | |||| ||||||| |||||||| || Sbjct 13468 GAATTTGTTGGTCTGAGATTGTGGTTGAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8617697368692