Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_009548.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq19028 223 6e-55 >seq19028 Length=31091 Score = 223 bits (246), Expect = 6e-55 Identities = 288/393 (73%), Gaps = 5/393 (1%) Strand=Plus/Plus Query 1592 TGAGGGTGACGAATTCTGCATTCTTTAATGCCCAATCTTTTAAAGCAGAATTTTTATCCT 1651 ||| |||| |||||||||||| | || | ||||| |||||| | |||||| |||| Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1652 CATTCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGA 1711 | | | | |||||||||| || || || || |||||||| | |||||| || || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1712 TTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGG 1771 | ||||| || || | | || | ||||| || ||||| ||| | ||||||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1772 CCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTAT 1831 ||||||| || ||||||||||||||||| || || ||||| |||| |||||||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1832 ACCAAGCATCATTACTGTAT-ACTTTTGGGCTT-AGATCAAGGTGTCCGCATAAATAATT 1889 |||| |||| ||| || || | |||| || | ||| | || ||||||| ||||| Sbjct 14018 ACCAGGCATTATT--TGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATT 14075 Query 1890 ATGTGGGCCTAATGACCTAGCCCACATTGTTTTCCCCGTCCGACTATCCCCTTCGATAAC 1949 |||||| ||||| || || |||||| ||| ||||| || | | || || || || || Sbjct 14076 ATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGAC 14135 Query 1950 TATACTTATCGGTCG-TAAAGGCCGCGCAGCGG 1981 ||||| | ||||| ||| ||||||||||||| Sbjct 14136 AATACTCTTGGGTCGTTAATGGCCGCGCAGCGG 14168 Score = 192 bits (212), Expect = 1e-45 Identities = 311/436 (71%), Gaps = 11/436 (3%) Strand=Plus/Plus Query 955 TCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTA 1014 ||| || || ||||| ||||||||||| | |||||||| |||||| || || Sbjct 13083 TCATACTGAAAATGCA---TTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1015 TGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGT-TCAGAATTAATAAAGATTGA 1073 | |||| ||| || | | ||||| ||||| ||| ||| |||||||||| ||||| Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTGA 13198 Query 1074 ATTTTATTATATTTGAATGTGTTACATATTCTGTGTTTTCCAATACATCCCATAATACAT 1133 |||||||| || | | ||||| |||| | || | ||||| ||||||||| Sbjct 13199 ATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACAT 13258 Query 1134 GATC-ACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAGTATTTC 1192 || ||| |||||||| | ||||||||||||||| ||||| || ||||| ||||| Sbjct 13259 TGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTC 13317 Query 1193 A-TACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGACGTAAACGAGTCCA 1251 | |||| ||| ||||||||||||||||| | ||| |||||||||||||||||| Sbjct 13318 ATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1252 GATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAA 1311 ||||| |||| | || ||| | ||| | || | |||||||||||||||||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1312 TTGTATTTGGATCTTTATGATGTC-GTGGTTGGTGTTGAATGGCCTCTCGTGGTGCTTGG 1370 | | ||||| || | || ||||| || || | ||| ||| || | ||| ||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGTTGA 13495 Query 1371 TTATCTTGAAATATAG 1386 |||||||||||||| Sbjct 13496 GGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8672077790098