Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_009606.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq19028 167 4e-38 >seq19028 Length=31091 Score = 167 bits (184), Expect = 4e-38 Identities = 551/844 (65%), Gaps = 36/844 (4%) Strand=Plus/Plus Query 1493 CCAATTTTTGAGTGATGTGTTTTCTTCTTTGTTTAGGTAATCTTTATAGCTGGCACCCTC 1552 ||||||||| | | | |||| ||| | | ||| | ||||||||||||| | Sbjct 13809 CCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGG 13868 Query 1553 ACCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTGAACTGGCTTGCCATA 1612 |||||||||||| | | ||||| || |||||||| || || | || ||| | || || Sbjct 13869 ACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTA 13928 Query 1613 CTTGCAATTTGACTG--CCAGTCTTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGC 1670 || | ||| ||| ||| | | |||||||||| || ||||| |||||||||| Sbjct 13929 TTTT-ACCTTG-CTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAG- 13985 Query 1671 TTTAGATATTGCGGTGTGACGTCGTCAATGACGTTATACTCCACTTCATTAGAGAACACT 1730 ||| ||||| ||||| ||||||| ||||||| | | ||| || | | | Sbjct 13986 -----ATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATT 14040 Query 1731 CTGGAATTGAAGTCGAGATGTCCACTGAGATAATTATGTGGGCCTAATGCCCGAGCCCAC 1790 | ||| || || | ||| || | || ||||||||||| ||||| | | |||||| Sbjct 14041 TTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCAC 14100 Query 1791 ATCGTCTTCCCTGTCCTAGAATCACCTTCTATGATAATACTAATAGGTC-TCTCTGGCCG 1849 ||||||||||| ||||| ||||| || |||| |||||| | |||| | |||||| Sbjct 14101 TCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCG 14160 Query 1850 CGCAGCTGAATCCTTTCCAAAATAATCATCTGCCCATTCTTGCATCTCGTCCGGAACGTT 1909 |||||| | |||| | || || ||| ||||||| ||| ||| || || Sbjct 14161 CGCAGCGGCATCC---CTAACATTTTCAGCTGCCCA-----GCA-CTC------AA--TT 14203 Query 1910 AGTGAAAGAAGAGAGTTGAAACGGAGGAACCCAGCGTTCCGGAGCCTTTTTGAATATTTT 1969 |||| ||||| ||| ||| ||| | |||| |||| |||||||| Sbjct 14204 GTTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATATTCG 14263 Query 1970 AGCCGCGTTAGCGACTAGGTTATGATGTTGAAGGAAGAAATGTTG-TGGTTGTTCTTCCC 2028 | | || | |||| ||||||| ||||| ||||| ||| ||| || ||| | Sbjct 14264 ATCTAATTTTGGAACTATATTATGATATTGAA-ATAGAAACTTTGCTGGCATTTTTTCTC 14322 Query 2029 GTATGATTCGCATTGCTTCGTCTGCACATGCTGCATTCAACGCCTTGGCATATGTGTCGT 2088 || || | ||||| || ||| ||| | ||||| | ||| || || | Sbjct 14323 TAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCAT 14382 Query 2089 TTGTAGATTGTTTACCTCCTCTGGCAGATCTACCGTCGATCTGGAATTGTCCCCATTCGA 2148 |||| | ||| ||||||||| ||||||| || ||||| || || | ||||| ||| Sbjct 14383 TTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGG 14442 Query 2149 TTGTATCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAACTTGATTTAGCTCCCTGAA 2208 | ||| | || || ||||||| ||| || || ||| ||||||||| || | Sbjct 14443 TGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGA 14502 Query 2209 TGTTCGGATGGAAATGTGCTGACCTGG---TAGGGGACACCAGATCGAAGAATCTGTTAT 2265 ||| || ||| ||||| || || | |||| | | ||||||| ||| | Sbjct 14503 AGTTTGGGTGG-TATGTGGTG--CTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGT 14559 Query 2266 TCGTGCACTGGTATTTGCCTTCGAACTGGATAAGGACGTGGAGATGAGGTTCCCCATTCT 2325 | | | || ||||||||||| || |||||| | ||| |||| |||||||| || Sbjct 14560 TTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCT 14619 Query 2326 CGTG 2329 ||| Sbjct 14620 GGTG 14623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8243432115486