Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010238.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq19028 226 5e-56 >seq19028 Length=31091 Score = 226 bits (250), Expect = 5e-56 Identities = 280/379 (74%), Gaps = 7/379 (2%) Strand=Plus/Plus Query 1619 GCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTCTTCTCTTCATCCAAGAACACTTTA 1678 ||||| | |||| |||||| || | | | ||| || || || || | |||| ||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1679 TAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGT 1738 || |||||| | || || |||||||| | |||||| || || || || || || || | | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1739 TCTGGCTTTCCGTACTTTGTATT--TGAAAGCCAGTCCCTTTGGGCCCCCATGAATTCTT 1796 | ||| ||||||| ||| || || | ||| | |||||||||||||| || |||| Sbjct 13915 ACAGGCCTTCCGTATTTTACCTTGCTGGA--CCAATTGCTTTGGGCCCCCATAAACTCTT 13972 Query 1797 TAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGATATTGTACCAGGCATCATTAT 1856 ||||||||||||| || || |||||||||| ||||||||| || |||||||||| ||| Sbjct 13973 TAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTG 14032 Query 1857 TGTAGACCTTAGGGCTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCCAGTGACC 1916 || | ||| | | |||| ||| || || | |||||||||||||| | || | Sbjct 14033 AATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATC 14092 Query 1917 TAGCCCACATTGTCTTCCCTGTCCTACTATCACCCTCAATCACTACACTTATTGGTC--T 1974 | |||||| |||||||||||| ||| ||||||||||| || | ||| | |||| | Sbjct 14093 TTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTT 14152 Query 1975 ATTGGCCCGCGCAGCGGCA 1993 | ||| ||||||||||||| Sbjct 14153 AATGG-CCGCGCAGCGGCA 14170 Score = 141 bits (156), Expect = 2e-30 Identities = 262/384 (68%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 965 GAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGT 1024 || |||| |||| ||||| || ||||||||| | |||||||| ||||| || || Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1025 GTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATT 1084 ||| |||| ||| | ||| | ||||| ||||| ||| |||||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1085 AAATTTTATTGAATATGATTGTTCGACATATACAATGTGTTGTAATACATTCCATAAAAC 1144 ||||||||| || ||| |||| || | || | | |||||| |||| || Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1145 ATGATCAACTGATCTGATTACATTATTAATACTGATAACTCCTAAATTATCTAAATATTT 1204 || || || | ||| || | ||| |||||||| ||||| ||||| |||||| |||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1205 TAAAACTTGAGTCTTAAAGACCCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCA 1264 | || || ||||| || ||||||||| ||| |||| || || ||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1265 GATTCGGTAGACTAGAAAACACTTGTGCATCTCCAACGCTTTCCTCAGGTTGTAGTTGAA 1324 ||| | || || ||| ||||| | | || | ||||||||||||| |||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1325 CTGTATTTGGACTTTGATTATGTC 1348 | ||||| | || ||||||||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTC 13460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8707265121596