Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010294.1 Length=2604 Score E Sequences producing significant alignments: (Bits) Value seq19028 215 8e-53 >seq19028 Length=31091 Score = 215 bits (238), Expect = 8e-53 Identities = 463/684 (68%), Gaps = 21/684 (3%) Strand=Plus/Plus Query 1511 TTTTTCTCCTCGCTGAGATACTCCTTATATGATGAATGGGGGCCAGGATTGCAGAGGAAG 1570 ||||| ||||| ||| |||| ||||| ||| || ||||||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1571 ATAGCGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTATTTGCAGTTTGATTG-CCA 1629 || | || || || || || || | | ||| |||||||||| | ||| | | ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTT-ACCTTGCTGGACCA 13946 Query 1630 ATCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGATTGACGTCATC 1689 || |||||||||||||| || |||||||||||||||||||||||||||| ||||| ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1690 GATTACGTTATACCACGCATCATTGGAGTAGATTTTTGGATTGAGATCGAGATGACCACA 1749 || | ||||||||| |||| ||| || || ||||| ||| | ||| | |||||| || Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1750 TAGGTAATTGTGAGGACCGAGACTCCGGGCCCATTGTGTTTTGCCCGTTCTTGATTGTCC 1809 ||||||||| || || || | | | ||||| | ||| || || ||||| || | || Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1810 CTCAATAACGATCGATATAGGTC-TCAATGGCCGCGCAGCGGTATCACAAACGTTTTGAT 1868 |||||| || || | |||| | |||||||||||||||| ||| | ||| |||| | Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Query 1869 GAACCCATTGCGTAATTATTGGAGGAACATTATTGAACGATGATTGACTAAATGGAGGGA 1928 |||| | |||| ||| ||||| |||| |||||| ||| | Sbjct 14187 CTGCCCAGCACTCAATTGTTGAAGGAA-------GAAC-------AACTAAAAGGACTAA 14232 Query 1929 CCCATGGTTCCGGTGGTTTC-TGAAAAATCCTTGTTGCGTTTGTGACTAGGTTGTGAAAT 1987 | | ||||| || || | |||| | || | | |||| |||| || ||| || Sbjct 14233 CATAAGGTTCAGGAGGGGGCATGAATATTCGAT-CTAATTTTGGAACTATATTATGATAT 14291 Query 1988 TGAAGGAAGAAATGTTG-GGGTTGTTCTTCCTTTATGATCTGCAGAGCCTCTTCTGCAGA 2046 |||| ||||| ||| || || ||| | || || || || ||||| || Sbjct 14292 TGAA-ATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGA 14350 Query 2047 TGTTGCGTTTAATGCCTTTGCGTATGTGTCATTAGCAGATTGCTGACCTCCTCTAGCTGA 2106 ||| || |||| || | ||| || ||||| | | || |||||||||||| || Sbjct 14351 TGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGA 14410 Query 2107 TCTGCCGTCGATTTGGAACTCTCCCCATTCAGTTGTGTCTCCGTCCTTGTCGATGTAGGA 2166 || || |||||||| || | ||||| || || || | ||| || ||||||| Sbjct 14411 TCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTT 14470 Query 2167 CTTGACGTCGGAGCTGGATTTAGC 2190 ||| || || || |||||||| Sbjct 14471 CTTAACATCTGAAGATGATTTAGC 14494 Score = 116 bits (128), Expect = 6e-23 Identities = 260/379 (69%), Gaps = 20/379 (5%) Strand=Plus/Plus Query 830 GAATCACACGGAGAACGCTTTGTTATTGTATATGGCATGTACACATGCCTCTAATCCTGT 889 || ||| || || || || ||||| |||||| | || ||||| ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 890 GTATGCAACCCTTAAAATTCGGGTCTATTTTTATGACTCGATTATGAA-TTAATAAAGTT 948 ||| || | | || || ||||||||||| | ||| || |||||||| | Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGA-GTGTATCAAATTAATAAATAT 13195 Query 949 TGTATTTTATTTCATGATTCTCAAGTACATCA----TTTACATAATTT--TTGTCTGTCA 1002 || ||||||||||||||| ||||||||||| ||| | |||| ||| | | Sbjct 13196 TGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1003 CGAATG-CAACAGCTCTAATTACATTGTTAACTGAAATAACCCCTAAGTTGTCTAAATAA 1061 | | || | ||||||||||| | |||||||| |||||| ||||| ||||||| | Sbjct 13256 C-ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1062 GACATTACAAGTAATTTGAATCTACTTAAATAAA--TCTGCCCAGAAGCTGTCGTCAAAG 1119 ||||||| | ||||| ||| ||||| ||| | || | | || | ||| ||| Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTC--GGAG--GACGT-AAAC 13369 Query 1120 TCGTCCAGACTTGGAAATTGAAGAAGGCTTTGTGGAGACCCAACGCTCTCCGCAGGTTGT 1179 |||| || | ||| |||| ||| |||||||| ||| || | ||| |||||||| Sbjct 13370 GAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGT 13429 Query 1180 GGTTGGCTCTGATTTGTAT 1198 ||||| || |||||||| Sbjct 13430 GGTTGAATCGAATTTGTAT 13448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8221040177260