Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010307.1 Length=2725 Score E Sequences producing significant alignments: (Bits) Value seq19028 208 1e-50 >seq19028 Length=31091 Score = 208 bits (230), Expect = 1e-50 Identities = 406/601 (68%), Gaps = 24/601 (4%) Strand=Plus/Plus Query 936 GAATCATACTGAAAATGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGT 995 || ||||||||||||||| ||||| |||||| | |||||||| ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 996 GTATGCTACTTTGAAGATACGGATCTATTCT-ATGATTCGATATCAAATTAATAAGAATT 1054 ||| |||| ||| | ||| | |||| | |||| |||||||||||||| ||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1055 GAATTTTATTATTTCATATTGTTTTACATACATTGTTCCTTCTAATACATTGTGTAATAC 1114 |||||||||| | ||||| ||||| || |||| || | ||||||| |||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1115 ATGATCAACTGCTCTAATTACAAAATTTAAAGAAACTATTCCTAAATTATTCAAGTATTT 1174 || || || |||||||| | | || | | || | ||||| | || |||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1175 CAATACTTGATTTTTAAATACTCTTAAGAAATGCGATGTCGCTGGTTGTAAGTGAGTCCA 1234 || ||| || ||||||||||||||||||| |||||| || |||| |||||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1235 TATCTGGAATGTCAAGAAACACTTGTGAATTCCCAATGCTTTCCTCAGGTTGTAGTTGAA 1294 |||| ||| | | |||| ||||||| || | | ||||||||||||| |||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1295 TTGGATCCTTATCTCTATTTCGTCCCTGTTCGTGTTGAATGGTCTGTTGAGGTGTTTTAG 1354 | | || ||| || ||| ||| | ||| || ||||||| ||| || || Sbjct 13437 TCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTGGTTGAG 13496 Query 1355 GATCTTGAAATATAG-GGGATTTGGCACCTCCCAGATA-------------------TAT 1394 ||||||||||||||| | | | ||||| ||| || Sbjct 13497 GATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTAG 13556 Query 1395 ACGCCATTCGTCGCTTGAGCTGCAGTGATGGGTTCCCCGGTGTGTGAATCCATGATTGTG 1454 ||||||||| ||||||| ||||||||| |||||| ||| || |||||||| Sbjct 13557 ACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGACCAGA 13616 Query 1455 GCAGTTGATTGATTTGTAAATTGAACACCCACAAGGGAGGTCAATTCTCTTTCTTCTAAT 1514 ||| | || |||| | |||||||| |||||||| ||||| | || ||||||| || Sbjct 13617 ACAGCTAATATTTTTGAATATTGAACATCCACAAGGCAGGTCTAGTCGTCTTCTTCTGAT 13676 Query 1515 T 1515 | Sbjct 13677 T 13677 Score = 203 bits (224), Expect = 6e-49 Identities = 265/361 (73%), Gaps = 8/361 (2%) Strand=Plus/Plus Query 1625 tttttttCCTCGTCTAGATATTCTGTATATGACGAGGTAGGACCTGGGATTGCAGAGGAA 1684 ||||||||||| || || | ||| |||| || |||||||| || |||||| | ||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGG-ATTGCACAAGAA 13886 Query 1685 GATTGTTGGAATGCCACCTTTAATTTGAATTGGCTTCCCGTACTTGGGTA--TTGCTTTG 1742 |||||| || || ||||| || || | | ||| | ||||| || || ||||| Sbjct 13887 GATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTT---TACCTTGCTGGA 13943 Query 1743 GCAGTCCCTTTGGGCCCCCATAAATTCTTTAAAGTGCTT-AGGTAGTGCGGGTCTACGTC 1801 || | ||||||||||||||||| |||||||||||||| || || ||||| || |||| Sbjct 13944 CCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTT 14003 Query 1802 ATCAATGACGTTGTACCAGGCATCGTTGCTGTATACTTTTGGACTGAGGTCTAAATGACC 1861 |||||||| ||| |||||||||| || || | ||| | | | ||||||||||| Sbjct 14004 ATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACC 14063 Query 1862 ACATAGGTAGTTATGTGGACCTAGTGACCTGGCCCACATTGTTTTTCCAGTCCTGCTGTC 1921 |||||||| |||||||| |||| || || |||||| ||| || || || || || Sbjct 14064 GCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTC 14123 Query 1922 ACCTTCTATTACGATGCTAATGGG-CCTCCATGGCCGCGCAGCGGCGTCCTTTATATTTT 1980 ||| || || || || || |||| | | |||||||||||||||| ||| | | ||||| Sbjct 14124 ACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTT 14183 Query 1981 C 1981 | Sbjct 14184 C 14184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8608100823738