Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010313.1 Length=2803 Score E Sequences producing significant alignments: (Bits) Value seq19028 237 3e-59 >seq19028 Length=31091 Score = 237 bits (262), Expect = 3e-59 Identities = 268/358 (75%), Gaps = 1/358 (0%) Strand=Plus/Plus Query 1680 ATTTTTCACTTCGTCTAGAAACTCTTTATATGATGATGTCGGGCCTGGATTGCAGAGGAA 1739 |||||| | || || || ||||||||||| || || || || |||||||| | ||| Sbjct 13827 ATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAA 13886 Query 1740 GATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTATTTGGTGTTGCTTTGCCA 1799 ||| || || || ||||| || || | | ||| | |||||||| ||||| ||| Sbjct 13887 GATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCA 13946 Query 1800 GTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGATAGTGGGGATCGACGTCATC 1859 | |||||||||||||| |||||||||||||| || ||||| || |||||||||| ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1860 AATGACGTTATACCAAGCATCATTTGAATACACCTTTGGACTCAGGTCTAGATGGCCACA 1919 ||||| ||||||||| |||| ||||||||| | || | ||| |||| ||| || || Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1920 CAAGTAATTGTGTGGACCTAATGACCTGGCCCACATTGTCTTGCCTGTACGACTATCACC 1979 | |||||| ||||| ||||| || || |||||| |||||| ||||| | | ||||| Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1980 TTCAATAACTATATTAACCGGTC-TCCAAGGCCGCGCAGCGGCATCCATTACATTCTC 2036 ||||| || ||| | |||| | | |||||||||||||||||| | ||||| || Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTC 14184 Score = 201 bits (222), Expect = 2e-48 Identities = 391/573 (68%), Gaps = 31/573 (5%) Strand=Plus/Plus Query 995 CATACTGAGAATGCTTTGTTGTTGTATATGGCTTGTACTCATGCTTCGAATCCCGTGTAT 1054 |||||||| ||||| |||| ||||||| || |||||||| || ||||| || ||| Sbjct 13084 CATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1055 GCTACTCTAAAAATACGCATCTATTTCTACGATGCAGTTACGAATTAATAAATATTAAAT 1114 |||| | | || ||||| ||||| || || || | |||||||||||||| ||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1115 TTTATTTCATGTTGTTCTAATACA--CAATTTGTACCTTCAAGTACGTTGTACAATACAT 1172 ||||||||||| | ||| | |||| || | | | | |||| ||| ||| | ||||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGC--TCAATTACATTGAATAATACAT 13258 Query 1173 GATCAACTGCTCTAATAATTGCATTAATTGAAATTACACCCAAATTATCTAAATATTTAA 1232 || || ||||||||||| ||||| ||| ||||| || |||||| |||| | Sbjct 13259 TGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCA 13318 Query 1233 ACACTTGAACTCTAAATACCCTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAAA 1292 || ||| | ||||||| ||||||||| ||| |||| ||||| | |||| | Sbjct 13319 TTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGA 13378 Query 1293 CTTTGAAGTTCAGAAAACACTTGTGAATCCCCAACGCCTTCCGCAGGTTGTGGTTGAACC 1352 |||||||| || ||| ||||||| || |||||| ||||||||||||||| | Sbjct 13379 TCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATC 13438 Query 1353 TGATTTGAACTGTGATTATGTCGTGTTG--GTAGTTGAACGGTCTCTCGTCGTGGTTGGT 1410 ||||| | | |||||||||| |||| | | ||| ||||| | ||||||| Sbjct 13439 GAATTTGTATTTCGATTATGTCG-GTTGTCGAATTTG-TTGGTCTGAGATTGTGGTTGAG 13496 Query 1411 TATCTTGAAATACAG-GGGATTTTGTATCTCCCAGATA------------AAA------- 1450 ||||||||||| || | | ||| ||||| ||| ||| Sbjct 13497 GATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTAG 13556 Query 1451 ACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCGGTGCGTAAATCCATTATTGGC 1510 |||||| || ||||| ||||||||| |||||| ||||||| |||||| | | Sbjct 13557 ACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGACCAGA 13616 Query 1511 GCAGTTGATGTGTATGAAGACTGAACACCCGCA 1543 ||| | || | | |||| | |||||| || || Sbjct 13617 ACAGCTAATATTTTTGAATATTGAACATCCACA 13649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8854318383760