Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010440.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq19028 246 5e-62 >seq19028 Length=31091 Score = 246 bits (272), Expect = 5e-62 Identities = 386/551 (70%), Gaps = 19/551 (3%) Strand=Plus/Plus Query 1582 AATGGGCTTGTGAGGGTGATGAATTCTGCATTCTTTAGTGCCCAATCTTTTAATGCTGAA 1641 ||||| ||||| |||| |||||||||||| | | | ||||| ||||||| | || Sbjct 13768 AATGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAAT--TTAA 13825 Query 1642 TTTTTATTT--TCGTCCAAGTACTCTTTATATGATGATGTTGGTCCCGGATTGCAGAGGA 1699 | ||| ||| || || | | |||||||||| || || || || |||||||| | || Sbjct 13826 TATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGA 13885 Query 1700 AGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCC 1759 |||| || || || ||||| || || | | ||| | ||||| || ||||| || Sbjct 13886 AGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACC 13945 Query 1760 AGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGGGGGTSGACGTCAT 1819 | | |||||||||||||| || |||||||| ||||||||||| || || | ||||| || Sbjct 13946 AATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTAT 14005 Query 1820 CAATGACGTTGTACCAAGCATCATTACTGTAGACCTTTGGACTTAAGTCCAGATGTCCAC 1879 |||||| ||| ||||| |||| ||| || | || | | || || | ||| || | Sbjct 14006 CAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGC 14065 Query 1880 ATAAGTAATTGTGTGGACCCAGTGACCTAGCCCACATCGTCTTCCCTGTCCTACTATCGC 1939 ||| |||||| ||||| || | || || |||||| ||||||||||| ||| || | Sbjct 14066 ATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCAC 14125 Query 1940 CCTCTATTACAATACTTTTAGGTC-TCCAAGGCCGCGCAGCGGCATCCCTTACATTCTCA 1998 |||| || |||||||| || |||| | | |||||||||||||||||||| ||||| ||| Sbjct 14126 CCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCA 14185 Query 1999 GAGACCCAATCTTCAAGTTCTTCTGGAACTTGATTaaaagaagaagaaagaaaaggacaa 2058 | |||| |||| ||| || || |||||| || |||||||| | Sbjct 14186 GCTGCCCAGCACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTA 14231 Query 2059 acaaaaacctctaaaggaggtgcgaaaaTCCTATCTAAATTATTATTTAAATTATGAAAT 2118 ||| || || ||| || ||| || | |||||| || | || ||||||| || Sbjct 14232 ACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATAT 14291 Query 2119 TGTAAAACAAA 2129 || || | ||| Sbjct 14292 TGAAATAGAAA 14302 Score = 172 bits (190), Expect = 1e-39 Identities = 309/439 (70%), Gaps = 17/439 (4%) Strand=Plus/Plus Query 955 TCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTA 1014 ||||||||| ||||| ||||| |||||| || |||||||| |||||| || || Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1015 TGCTACTTTGAAGATCA-GAATCTATTTCTATGATTCTCT-TCAGAATTAATAAAGATTG 1072 | |||| ||| || || | | ||||| ||||| | | ||| |||||||||| |||| Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197 Query 1073 AATTTTATTATACTTGAAAGTT--GTACATCGATTGTTCTTTCCAATACATTCCATAATA 1130 ||||||||| | ||| | | ||||||| | |||| || | |||||| |||||| Sbjct 13198 AATTTTATTTCA--TGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1131 CATGAGAAACTGCCCTAATTACATTGTTAATGCTGATTACACCCAAATTATCTAAATACT 1190 ||| || || ||||| | ||||||||| || || ||||| || |||||| | | Sbjct 13256 CATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1191 TCAT-ACATTGATATTTAAAGACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTC 1249 |||| ||| || ||||||| |||||||||||| | ||| |||| |||| |||||| Sbjct 13316 TCATTACAC-GAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1250 CAAATCTGGAAAATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTG 1309 | |||| ||| | || ||| | ||| | || | |||||||||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1310 AACTGTATCTGGATCGTTATGATGTCGTGGTTGTTG--TTGAATGATCTCTCGTGGTGTT 1367 || | || || || || ||||| |||||| | || || ||| | ||| | Sbjct 13435 AATCGAATTTGTATTTCGATTATGTC--GGTTGTCGAATTTGTTGGTCTGAGATTGTGGT 13492 Query 1368 TGGTGATCTTGAAATATAG 1386 || ||||||||||||||| Sbjct 13493 TGAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8723259363186