Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010441.2 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq19028 253 4e-64 >seq19028 Length=31091 Score = 253 bits (280), Expect = 4e-64 Identities = 307/417 (74%), Gaps = 1/417 (0%) Strand=Plus/Plus Query 1584 AATGGTTGTGTGATGGTGATGAATTCTGCATTCTTTAGTGCCCAGTCTTTGAGTGCAGAA 1643 |||||||||||||||||| |||||||||||| | | | ||| | ||| | | | | Sbjct 13768 AATGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATA 13827 Query 1644 TTTTTATCCTCATCTAGGTACTCTTTATACGACGACGTTGGTCCTGGATTGCAGAGGAAG 1703 ||||| ||||| || ||| |||||||||| || || || || |||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1704 ATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTATTTCGTGTTGCTTTGCCAG 1763 || || || || ||||| || || | | ||| | |||||||| ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1764 TCCCTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCG 1823 | || ||||||||||| || |||||||||||||||||||| || || ||||||| ||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1824 ATGACGTTGTACCAAACATTATTACTGTAGACCTTTGGACTTAAGTCCAGATGTCCACAT 1883 |||| ||| ||||| ||||||| || | || | | || || | ||| || ||| Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1884 AAATAATTGTGTGGACCCAGTGACCTAGCCCACATCGTCTTCCCTGTCCTACTATCACCC 1943 | ||||| ||||| || | || || |||||| ||||||||||| ||| |||||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1944 TCTACCACTATACTTTTAGGTC-TCCACGGCCGCGCAGCGGCATCCCTCACATTCTC 1999 || | || ||||| || |||| | | |||||||||||||||||||| ||||| || Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTC 14184 Score = 178 bits (196), Expect = 2e-41 Identities = 267/371 (72%), Gaps = 9/371 (2%) Strand=Plus/Plus Query 957 TCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTA 1016 ||||||||| ||||| ||||| |||||| || |||||||| |||||| || || Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1017 TGCTACTTTGAAGATCA-GAATCTATTTCTATGATTCTCT-TCAGAATTAATAAAGATTG 1074 | |||| ||| || || | | ||||| ||||| | | ||| |||||||||| |||| Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197 Query 1075 AATTTTATTATACTTGATTGTTGTACATCGATTGTTTTTTCCATTACATGCCATAATACA 1134 ||||||||| | ||| ||||||| | ||||| || ||||||| |||||||| Sbjct 13198 AATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACA 13257 Query 1135 TGAGAAACTGCCCTAATTACATTGTTTATGCTAATTACACCCAAATTATCTAAATACTTC 1194 | || || ||||| | |||||| || ||||| ||||| || |||||| | ||| Sbjct 13258 TTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTC 13317 Query 1195 A-TACATTGATATTTAAAGATTCTTAAGAAACGCCAAGTCTGAGGACGTAAATGAGTCCA 1253 | |||| || ||||||| | |||||||||| | ||| ||||||||||| |||||| Sbjct 13318 ATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1254 GATCTGGAAAATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTTAGGTTGTGGTTGAA 1313 ||||| ||| | || ||| | ||| | || | ||||| |||||||||||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1314 CTGTATTTGTA 1324 | ||||||| Sbjct 13437 TCGAATTTGTA 13447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8688072031688