Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010713.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq19028 239 8e-60 >seq19028 Length=31091 Score = 239 bits (264), Expect = 8e-60 Identities = 299/409 (73%), Gaps = 1/409 (0%) Strand=Plus/Plus Query 1584 TGTGAGTGTGACGAACTCTGCATTTTTCAAAGCCCAAGTCTTTAGTGCGGATTGCTTTTC 1643 ||||| ||| ||| |||||||| | ||||| |||| | |||| | | ||||| Sbjct 13776 TGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTC 13835 Query 1644 TTCATTTAAAAATTGAATATAGCTGGCACCGGGCCCTGGATTGCAGAGAAAGATAGTGGG 1703 || | | || | ||||||||| | || || |||||||| | ||||| || || Sbjct 13836 CTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGG 13895 Query 1704 AATCCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTGCTTTGCCAGTCTCTTTG 1763 |||||||| || || | || ||| ||||||||||| ||||| ||| | ||||| Sbjct 13896 TATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTG 13955 Query 1764 GGCCCCCATGAATTCCTTAAAGTGCTTTAAATAGTGGGGGTCGACATCATCAATGACGTT 1823 ||||||||| || || ||||||||||||| ||| || || ||||| | |||||||| ||| Sbjct 13956 GGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTT 14015 Query 1824 ATACCATGCGTCATTACTGTAAACCTTGGGACTCAAGTCTAGGTGACCACATAAATAATT 1883 |||||| || | ||| |||| || | |||| |||| ||||| |||| ||||| Sbjct 14016 ATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATT 14075 Query 1884 ATGTGGTCCAAGTGATCTGGCCCACATTGTTTTCCCTGTTCGACTATCGCCCTCAAGAAC 1943 ||||||||| | ||||| |||||| ||| |||||||||| | || ||||||| || Sbjct 14076 ATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGAC 14135 Query 1944 AATTGATTTAGGTC-TTAATGGCCGCGCAGCGGCACTCATCACATTTTC 1991 ||| || |||| |||||||||||||||||||| | | |||||||| Sbjct 14136 AATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTC 14184 Score = 145 bits (160), Expect = 1e-31 Identities = 300/438 (68%), Gaps = 9/438 (2%) Strand=Plus/Plus Query 949 GAATCATACAGAGAATGCATTGTTGTTGTATATGGCATGTACACATGCCTCAAATCCTGT 1008 || |||||| || |||||||||| ||||||| | || ||||| || |||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1009 GTATGCTACGTTAAAAATACGAATCTATTTTTATGATTCGGTAACAAATTAATAATATTT 1068 ||| ||| | | || ||| | ||||||||||| ||| ||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1069 GAAATTCACCGAATGGTGGTCGATTACATCCAAAGTACCAGCTATTACATCATACAAAAC 1128 ||| || | ||| | || | |||||||| || | ||||||| | || || Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1129 A-TGTCTTACAGTCCTAATTACATTGTTAATTGAAATAACCCCTAAACTATCTAAGTACT 1187 | |||| ||||| ||||| | ||||||||| |||||| ||||| | ||||| | | Sbjct 13257 ATTGTC-TACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1188 TCA-TACATTCATTTTTAAAGACTCTTAAAAATCTCCCAGTCGGTGGATTCAAACGTGTG 1246 ||| |||| | |||||| |||||||| || ||||| ||| ||||| || Sbjct 13316 TCATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1247 TAGATCCGAAAGGATAGGAAGCATTTGTGAAGTCCCAGTGCTCTCCGTAGGTTGTGGTTG 1306 |||| ||| ||||| ||||||||| |||| | ||| |||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1307 AATTGTATCTGGATGGTGATGATGTCGTGTGGTCGGA-ACATTGGCCTGTCGAGGTGGCT 1365 ||| | || || || ||| |||||| || |||| | |||| ||| |||| | Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCG-GTTGTCGAATTTGTTGGTCTGAGATTGTGGTT 13493 Query 1366 GATGATTTTGAAATATAG 1383 || ||| ||||||||||| Sbjct 13494 GAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8739161063740