Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010812.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq19028 250 4e-63 >seq19028 Length=31091 Score = 250 bits (276), Expect = 4e-63 Identities = 457/662 (69%), Gaps = 27/662 (4%) Strand=Plus/Plus Query 1603 GAATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGTA 1662 |||||||||||| | | || ||| | ||||||| |||||| ||||| | | | | Sbjct 13788 GAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAA 13847 Query 1663 CTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTT 1722 ||||||||| || || || || |||||||| | |||||| || || || ||||| || Sbjct 13848 CTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTT 13907 Query 1723 AATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1782 || | | || | ||||| || ||||| ||| | |||||||||||||| || Sbjct 13908 TATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAA 13967 Query 1783 TTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATC 1842 ||||||||||||||||| || || || ||||||| |||||||| ||||||||| |||| Sbjct 13968 CTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATT 14027 Query 1843 ATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGTCCCAG 1902 ||| || | || | ||| ||||| ||||||||| || |||||||||||||| | Sbjct 14028 ATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAA 14087 Query 1903 TGATCTGGCCCACATTGTTTTACCCGTACGACTATCACCTTCTATCACAATACTGATGGG 1962 ||||| |||||| ||| || || || | | ||||| || || |||||||| |||| Sbjct 14088 AGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGG 14147 Query 1963 TC-TCCATGGCCGCGCAGCGGCATCCCTCACGTTCTCGGAGACCCATTCTTCAAGTTCTT 2021 || | |||||||||||||||||||||| || || || | |||| |||| Sbjct 14148 TCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA------ 14201 Query 2022 CTGGAACTTGATCGAAAGAAGAAGAAAGAAAAGGACAAACAAAAACCTCCAACGGAGTTG 2081 ||| | ||| |||||| || |||||||| |||| || || | | | | Sbjct 14202 -------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTC--AGGAGGGGG 14251 Query 2082 CA--AAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAATACAAAATCTTTGGG 2139 || || || | |||||| || | | || ||||||| | || |||| ||| ||||| Sbjct 14252 CATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAA--CTTTGCT 14309 Query 2140 AGC-TTTCTCCCTTAATATATTGATGGCCGCAGCTT---TGGACCCTGAGTTGATTGCCT 2195 || ||| | | ||||| || || | ||| ||| | || | | | || | Sbjct 14310 GGCATTTTTTCTCTAATA-ATAGAAAG-CGCTTCTTCAATTGATGTAGCACTTAACGCTT 14367 Query 2196 CGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGa 2255 | ||| || | || || | | || ||||||||||||| |||| |||||||| ||| | Sbjct 14368 CTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAA 14427 Query 2256 aa 2257 || Sbjct 14428 AA 14429 Score = 210 bits (232), Expect = 4e-51 Identities = 282/384 (73%), Gaps = 9/384 (2%) Strand=Plus/Plus Query 956 TCATACTGAAAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTA 1015 ||||||||||||||| ||||| |||||| || |||||||| |||||| || || Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1016 TGCTACTTTGAAAATCAGAATCTATTTTTATGATTCTGT-TCAGAATTAATAAAGATTGT 1074 | |||| ||| || | | ||||||||||| ||| ||| |||||||||| |||| Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTGA 13198 Query 1075 ATTTTATTATATTTGAATGTGTTACATATTCTGTTTTTTCCAATACATCCCATAAAACA- 1133 |||||||| || | | ||||| |||||| || | ||||| |||| ||| Sbjct 13199 ATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACAT 13258 Query 1134 TGATTACACGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCCAAATATTTC 1193 || |||| |||||||| | ||||||||||||||| ||||| || || ||| ||||| Sbjct 13259 TGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTC 13317 Query 1194 A-TACATTGAATTTTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCA 1252 | |||| ||| ||||||||||||||||||| | ||| |||| |||| ||||||| Sbjct 13318 ATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1253 GATCTGGAAGTCCAGATAACACTGGTGTATCCCCAATGCTTTCCTCAAATTGTGGTTGAA 1312 ||||| ||||| || || | ||| | || | | ||||||| ||||||||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1313 TCGGATTTGTATGTGGATTATGTC 1336 ||| |||||||| | ||||||||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTC 13460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8707265121596