Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010818.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq19028 230 4e-57 >seq19028 Length=31091 Score = 230 bits (254), Expect = 4e-57 Identities = 371/532 (70%), Gaps = 21/532 (4%) Strand=Plus/Plus Query 1589 GAATGTTGCATTTTTTAAAGCCCAGGATTTTAATGCTGAGTTCTTATCCTCGTCTAAGAA 1648 |||| |||||| | |||| ||| ||||||| || || ||||| || | ||| Sbjct 13788 GAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAA 13847 Query 1649 CTCTTTATAACTTGCATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTT 1708 ||||||||| || | | | || || |||||||| | ||||||||| ||||| || || || Sbjct 13848 CTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTT 13907 Query 1709 AATTTGAACTGGCTTCCCGTACTTT---GTGTTGGATTGCCAGTCCCTTTGGGCCCCCAT 1765 || | || ||| | ||||| ||| || |||| ||| | |||||||||||||| Sbjct 13908 TATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGA---CCAATTGCTTTGGGCCCCCAT 13964 Query 1766 GAACTCTTTAAAGTGTTTGAGGTAGTGCGGATCGACGTCATCAATGACGTTATACCATGC 1825 |||||||||||||| || || || ||||||||||||| |||||||| ||||||||| || Sbjct 13965 AAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGC 14024 Query 1826 GTCGTTACTGTACACCTTTGGGCTAAGATCTAAATGCCCACATAGATAGTTGTGTGGGCC 1885 | || || | || | | ||||||||| || ||||| || || ||||| || Sbjct 14025 ATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCC 14084 Query 1886 TAAAGACCTAGCCCACATAGTCTTCCCAGTACGACTATCTCCCTCAATTACTATACTTTG 1945 |||||| || |||||| |||||||| || | | || |||||||| || ||||| | Sbjct 14085 TAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTT 14144 Query 1946 AGGTC-TAAGGGGCCGCGCAGCGGCGTCAACAACATTCTCCGACGCCCACTCTTCAAGTT 2004 |||| | | |||||||||||||| || |||||| || | ||||| |||| Sbjct 14145 GGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA--- 14201 Query 2005 CTTCTGGAACTTGATCGAAAGAAGAAGACGAAAAAGGAGAAACATAAGGAGCTGGTGGCT 2064 ||| | ||| |||||| | ||||||| ||||||||| | || || Sbjct 14202 ----------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGG 14250 Query 2065 CCTGAAAGATTCTGTTTAAATTTGCATTTAAATTATGAAATTGCAGTACAAA 2116 | || |||| | ||| |||| | || ||||||| |||| | || ||| Sbjct 14251 GCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAA 14302 Score = 96.9 bits (106), Expect = 6e-17 Identities = 286/441 (65%), Gaps = 9/441 (2%) Strand=Plus/Plus Query 936 GAATCACACCGAGAATGCATTGATGCTTTATATGGCTTGTACCCATGCTAGTAACCCTGT 995 || ||| || || ||||||||| || ||||| || || ||||| ||| ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTTG---TATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 996 TTATGCTCCGCTTAAGATTCGGATTTATTTTTATGACTCTGTAACGAATTGAAATTAATA 1055 ||| | | | | | || | |||||||||||| |||| | ||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATC------AAATTAATA 13190 Query 1056 AAGTTTGAATTTTATATCTGAATATTGGTCTACATACATTGTTTGATTAATTACATTGTA 1115 || ||||||||||| || ||||| ||||| || |||||| | |||||||||| | Sbjct 13191 AATATTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAA 13250 Query 1116 CAATACATGTTCAACGGCTTTAATAACTAAATTAAGTGAGATTACACCGAGATTGTTGAG 1175 ||||||| || || ||| |||||| |||| || ||||| | || | Sbjct 13251 TAATACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAA 13310 Query 1176 ATACTTGAGTACTTGGGTTTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTGTAAGGT 1235 | | || | ||| | ||| ||||| |||||||||| |||||||| |||| Sbjct 13311 AAATTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACG 13370 Query 1236 CGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCACTCCCAGAGCTTTTCGAAGGTTGTA 1295 |||| ||| |||| | || ||| ||||| | ||| | || | ||||||| Sbjct 13371 AGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTG 13430 Query 1296 GTTGATATGGATCCTCATTGTTATGATGTCCATGTTCGTCGTGAATGGACGGTTGTCGTG 1355 ||||| | || ||| || ||||| | ||| | ||| | | | ||| Sbjct 13431 GTTGAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTG 13490 Query 1356 GCTGAGGATTTTGAAATATAG 1376 | ||||||| ||||||||||| Sbjct 13491 GTTGAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8646487003554