Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30]
33,873 sequences; 833,080,760 total letters
Query= NC_010837.1
Length=2666
Score E
Sequences producing significant alignments: (Bits) Value
seq19028 113 8e-22
>seq19028
Length=31091
Score = 113 bits (124), Expect = 8e-22
Identities = 424/658 (64%), Gaps = 33/658 (5%)
Strand=Plus/Plus
Query 1557 TTTTCCTCTCTGTCTAGGAACCTTTTATAGCTGGCCCCCTCGCCAGGATTGCAAAGCACG 1616
|||||||| || |||||| ||||||||||| ||||||||||| | | |
Sbjct 13831 TTTTCCTCC---TCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887
Query 1617 ATGCATGGGATGCCCCCTTTAATTTGAACTGGTTTACCGTATTTACAATTTGACTG--CC 1674
|| || || || || || || | || || | |||||||| | ||| ||| ||
Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTT-ACCTTG-CTGGACC 13945
Query 1675 AGTCCTTCTGGGCCCCAATTAACTCTTTCCAGTGTTTCATCTTTAAATATTTGGGGTCCA 1734
| | | |||||||| || |||||||| |||| ||||| ||| | || || |
Sbjct 13946 AATTGCTTTGGGCCCCCATAAACTCTTTAAAGTG------CTTTAGATAATGCGGATCGA 13999
Query 1735 CGTCATCAATAATATTGTAGTGTGCTTCGTTGGAATAGCACTTAGGGTTAAAGTCTAGGT 1794
||| |||||| || || || || | || ||||| ||| || || |||| |
Sbjct 14000 CGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAAT 14059
Query 1795 GACCACTTAAATAATTGTGGACCCCTAAAGCACCGGCCCACATCGTCTTCCCTGTTCGAG 1854
|||| | || ||||| || ||||||| | |||||| ||||||||||||| ||
Sbjct 14060 GACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAG 14119
Query 1855 AATCACCTTCAATTATTATACTAATAGGTC-TCTCCGGCCGCGCAGCGGCACTTCTTCCG 1913
| ||||| ||||| | ||||| | |||| | ||||||||||||||| | ||
Sbjct 14120 ACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCA----TCCCT 14175
Query 1914 AA-ATAATCGTCCGCCCAAGCTTGCATCTCTTCTGGCACGTTAGTGAATGATGACAGTGG 1972
|| || || | ||||| ||| ||| || |||| || ||
Sbjct 14176 AACATTTTCAGCTGCCCA-----GCA-CTC--------AATTGTTGAAGGAAGAACAACT 14221
Query 1973 AAACGGAGGAACCCATGGCTCTGGAATTGATTTAAATATCCGTTGAGCATTTGCAACTAG 2032
||| ||| ||| | || || ||| | | ||||| || | |||| |||||
Sbjct 14222 AAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTAT 14281
Query 2033 GTTGTGATATTGGAGGAAGAAGTGTTGTGGCTGTTCCTCCTTTATTATATCAAGAGCCTG 2092
|| |||||||| | | || | | |||| || || | || ||| ||| || |
Sbjct 14282 ATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTC 14341
Query 2093 TTCCACGGACGATGTGTTTAACGCCTTTGAGTATGAATCGTTAGCTGTCTGTTTACCTCC 2152
||| | || | | ||||||| | || || ||| || | ||| ||| ||||||
Sbjct 14342 TTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCC 14401
Query 2153 TCGAGCAGATCTTCCGTCGATCTGAAAATTACCCCATTCGATGTAATCTCCGTCCTTC 2210
|| |||||||| ||| ||||| |||||||| ||||| ||| ||||||| | ||| |||
Sbjct 14402 TCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTC 14459
Score = 104 bits (114), Expect = 4e-19
Identities = 383/594 (64%), Gaps = 56/594 (9%)
Strand=Plus/Plus
Query 900 ATTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGTTAAAGATACG 959
|||||||||||| | |||||||| ||||||||||| ||| ||| | | | |||
Sbjct 13098 ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATATTGTACTATGAGAACACG 13157
Query 960 GATCTATTTTTACGATTCGATATCAAATTAATAAATTCTGAATTTTATTGAATGTTGTTC 1019
| |||||||| || |||||||||||||||| ||||||||||| ||| | |||
Sbjct 13158 CAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAATTTTATTTCATGATATTC 13217
Query 1020 AAGTACA-----TGATGGAT-ATATGCTTTGTCTGTTGCAAAGCGAACTGCTCTAATTAC 1073
||||||| || | | | | | | ||| | | || | || |||||||| |
Sbjct 13218 AAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTGTCTACAGCTCTAATAAT 13277
Query 1074 ATTGTTAATCGAAATTACACCTGAACGGT-TAAGA-------TACAACATAACTAAATAC 1125
||||||||| ||| |||||| | |||| ||| | |||| | | |||||||
Sbjct 13278 ATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATTACACGAAATTTAAATAC 13337
Query 1126 TGGAATCTATTTAAGTATGTCGTCCCAGAAGCTGTCAGGGAAGTCGTCCAGACTTGGAAG 1185
| | | | |||||||| || | || | || |||| || | ||||
Sbjct 13338 TCTTAAGAA--AACGTATGTCG-----GAGGACGTAAACGA----GTCCTGATCTTGAAG 13386
Query 1186 TTCAGATACGCCTTGTGGAGATCCAACGCTTTCCGCACGTTGTGGTTGAACCGGATCTGT 1245
|| || | || ||||| |||| || | |||| || |||||||||||| || || |||
Sbjct 13387 TTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCGAATTTGT 13446
Query 1246 ATGT-GATACACTCG--AGTCG---TTGTGTATCTGATGTCCTCTACTTG-GTACGTCTT 1298
|| | ||| ||| |||| |||| ||||| | | | ||| | | ||||
Sbjct 13447 ATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGAT--TGTGGTTGAGGA--TCTT 13502
Query 1299 GAAATAGAG-GGGATTTGGTGTCTCCCAGATA-------------------TAGACGCCA 1338
|||||| || | | | | ||||| ||| |||||||||
Sbjct 13503 GAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTAGACGCCA 13562
Query 1339 TTCTCCGCCTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTCCTCTGCAGTT 1398
||| ||| || | ||||||||| ||||||||||||| ||||||| || ||| |
Sbjct 13563 TTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGACCAGAACAGCT 13622
Query 1399 AATATGGAGAAATATGGAACAGCCACAAACTAAATCAATTCGTCTTCTCCTAAT 1452
||||| ||||| ||||| |||||| | || | ||||||||| || ||
Sbjct 13623 AATATTTTTGAATATTGAACATCCACAAGGCAGGTCTAGTCGTCTTCTTCTGAT 13676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8419368772976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |