Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010840.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq19028 183 5e-43 >seq19028 Length=31091 Score = 183 bits (202), Expect = 5e-43 Identities = 498/756 (66%), Gaps = 55/756 (7%) Strand=Plus/Plus Query 1579 GTGTAATGAAGACTGCATTCTTCAATGCCCACTGTTTCAGTGCTGCATTCTTTTCTTCGT 1638 ||||| ||| ||||||| | ||| | ||| | ||| | | ||| ||||| || | Sbjct 13783 GTGTA--GAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCT 13840 Query 1639 CCAAGAATTCTTTATAGCTGCTTTGTGGTCCTTTATTGCACAAGAAGATAGTGGGAATGC 1698 | | ||| |||||||||||| || || ||||||||||||||| || || || | Sbjct 13841 CGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCC 13900 Query 1699 CGCCTTTAATCATCATCGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCACGCTGGGCCC 1758 | || || ||| | | ||| ||||||||||| ||||| ||| | | ||||||| Sbjct 13901 CACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCC 13960 Query 1759 CCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTGTACC 1818 |||| || |||||||||||||||||||| || ||||| |||| |||||||| ||| |||| Sbjct 13961 CCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACC 14020 Query 1819 AAGCATCGTTACTGTAAACCCTAGGGTTTAGATCCAAGTGACCGCACAAGTAATTGTGGG 1878 | |||| || |||| || || | ||| || |||||||| | |||||| || | Sbjct 14021 AGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTG 14080 Query 1879 GTCCCAAACTACGCGCCCACATTGTTTTGCCCGTACGACTATCGCCCTCCAATACTA-AC 1937 |||| ||| | |||||| ||| || || || | | || ||||| | || | || Sbjct 14081 GTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATAC 14140 Query 1938 CCTATGGGTCTAATCGGGAGCGCAGCGGAAAAAGGCCGCGCAGCGGAACACCTCAAATTT 1997 || |||||| | || ||||||||||||| | ||| | |||| Sbjct 14141 TCT-TGGGTC-----------------GTTAATGGCCGCGCAGCGGCATCCCTAACATTT 14182 Query 1998 GACGACACCCAATCGACGAGTTCTGGCGGAACTC---TGTCGAAGGACGAAACAGTAAAT 2054 | |||| | |||| ||| |||||| ||| | |||| Sbjct 14183 TCAGCTGCCCA-----------------GCACTCAATTGTTGAAGGAAGAACAACTAAAA 14225 Query 2055 GG-CGAACGATAAACTTC-GATTCGAGAAGGAAAAATCCGATCTAAATTTGTCATTAAAT 2112 || | ||| |||| ||| | | | | | || || |||||||| |||| | || || Sbjct 14226 GGACTAAC-ATAAGGTTCAGGAGGGGGCATG-AATATTCGATCTAATTTTGGAACTATAT 14283 Query 2113 TGTGAAACTGCAACACATAATCTTTTGGTGCTAATTCTTTTAGCACCTTCAATGCGTCTT 2172 | ||| | || || | | | | | ||| | |||| | | | | || ||| ||| Sbjct 14284 TATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAA--TAGAAAGCG-CTT 14340 Query 2173 CTTTATTTCCAGTATTAATT---GCTTGTGCGTATGCATCGTTAGCTGTTTGTTGACCAC 2229 ||| | || ||| | || |||| ||| || |||| || | ||| ||| ||| | Sbjct 14341 CTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTC 14400 Query 2230 CACGAGCAGATCGTCCATCGATCTGGAAAACACCCCACTC--TAAAACGTCTCCGTCTTT 2287 | | |||||||||||||||||| || ||| ||||| || | || || | |||||| Sbjct 14401 CTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAA--TCACAGTCTTT 14458 Query 2288 GTCGATGTATGTCTTGACATCTGACGCTGATTTAGC 2323 |||||||| |||| |||||||| | ||||||||| Sbjct 14459 CGCGATGTATTTCTTAACATCTGAAGATGATTTAGC 14494 Score = 165 bits (182), Expect = 1e-37 Identities = 270/386 (70%), Gaps = 5/386 (1%) Strand=Plus/Plus Query 939 GAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCATCCATCAAATCCTGT 998 || |||||||||||||||||| ||||||||| | |||||| |||| |||||||| Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 999 ATATGCGACTTTAAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAATATGTATT 1058 |||| ||| | | || || | ||||||||||| ||| |||||||||| |||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1059 AAGTTTTACATCAT-ATGTTGCCCATACATCAACTGTTCTTTGCAATACATTGTCTAATA 1117 | ||||| |||| || || | |||||| |||||| | | ||||||| ||||| Sbjct 13197 GAATTTTATTTCATGATATT-CAAGTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1118 CATGATAAGCTGCTCTTATTACATTATTAATTCCAACAACACCTAACATATCGAGGTACT 1177 ||| | | ||||| || | ||| ||||| | || ||||||||| || | | | Sbjct 13256 CATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1178 TAAGGACCTGGGTTTTGAAAACTCTCAAGAAACGCCCAGTCTGAGGGCGTAAGCCCGTCC 1237 | | || | ||| || ||||| |||||| ||| |||| ||||| | |||| Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1238 AGATCTGGAATGTTAGAAAACACTTGTGAAGCCCCAGTGCTTTCCTCAGGTTGTGGTTGA 1297 ||||| ||| | || ||| |||||||| |||| | ||||||||||||||||||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1298 ACTGTATTTGGACTGTTATAATGTCG 1323 | | ||||| | | || |||||| Sbjct 13436 ATCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8707265121596