Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_010946.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq19028 269 5e-69 >seq19028 Length=31091 Score = 269 bits (298), Expect = 5e-69 Identities = 443/634 (70%), Gaps = 25/634 (4%) Strand=Plus/Plus Query 1623 ATTCTTATCCTCTTCCAAGTACTCTTTATATGATGACGTTGGTCCTGGATTGCATAGGAA 1682 ||| || ||||| || | | |||||||||| || || || || |||||||| | ||| Sbjct 13827 ATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAA 13886 Query 1683 GATTGTCGGGATACCACCTTTAATTTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCA 1742 ||||||||| || ||||| || || | | ||| ||||||| || ||||| ||| Sbjct 13887 GATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCA 13946 Query 1743 GTCCCTTTGGGCCCCCATGAATTCTTTGAAATGCTTTAAATAGTGGGGGTCGACGTCATC 1802 | |||||||||||||| || ||||| || ||||||| ||| || || ||||||| ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1803 AATGACGTTGTACCATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCA 1862 ||||| ||| ||||| |||| || || | || | ||| ||||| ||||||||| Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1863 CAGATAATTATGTGGGCCCAATGAACGAGCCCACATTGTCCTTCCTGTACGACTCTCACC 1922 || ||||||||||| || || || | |||||| |||| | ||||| | | |||||| Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1923 CTCTATGACAATACTTATGGGTC-TATTTGGCCGCGCAGCGGAACACCCCACGTTCTCAG 1981 ||| ||||||||||| |||||| | |||||||||||||| | || || || |||| Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Query 1982 AAACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAAAGAAAAGGACAAA 2041 |||| |||| ||| | ||| |||||| || |||||||| || Sbjct 14187 CTGCCCAGCACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAA 14232 Query 2042 CAAAAACCTCTAAAGGA-GGTGCA--AAAATCCTATCTAAATTAGAATTTAAATTATGAA 2098 || || || |||| || ||| || || | |||||| || | | || ||||||| Sbjct 14233 CATAAGGTTC---AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGAT 14289 Query 2099 ATTGAAAAATATAATCTTT--TGGGAGTTTCTCCCTTATTATACTTAGTGCTGCTTCTTT 2156 |||| ||||| || |||| ||| | ||| || || || ||| || ||| |||| | Sbjct 14290 ATTG--AAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAAT 14347 Query 2157 GGAACCTGCGTTTAAGGCTTCTGCGCATGCGTCGTTAGAATTCTGGCACCCTCCTCTAGC 2216 || || |||| |||||||| || | || || | | || | ||||||||||| Sbjct 14348 TGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGC 14407 Query 2217 ACTTCGACCGTCGATCTGGAATTCTCCCCAGTCG 2250 | ||| || ||||| || || | ||||||||| Sbjct 14408 AGATCGTCCATCGATTTGAAAATTGCCCCAGTCG 14441 Score = 163 bits (180), Expect = 5e-37 Identities = 270/387 (70%), Gaps = 7/387 (2%) Strand=Plus/Plus Query 937 GAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCGAACCCTGT 996 || |||||||||||||||||| ||||||||| | ||||| ||||| || ||||| Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 997 ATACGCGACTTTGAAAATTCGGATCTATTTTTATGATTCGGTAACAAATTAATATATATT 1056 ||| ||| ||| || || | ||||||||||| ||| |||||||||| ||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1057 CAATTTCACATTATATGTTGTCCA--TACATCAATTGTCTTTTCCAATACATCGTCTAAA 1114 ||||| | || ||| | | || |||||| | ||| | || | ||||| | ||| Sbjct 13197 GAATTTTA--TTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAAT 13254 Query 1115 ACGTGATAAACTGCTCTTAATACATTGTAAATACTAATCACCCCTAACATATCCAAGTAC 1174 || | | || ||||| | | ||||| ||||||||| || ||||| || || | Sbjct 13255 ACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1175 TTAAGGACTTGGGTCTTAAAGACTCTCAAGAAAATCCCAGTCGGAGGGCGTAAGCCCGTC 1234 || | || | ||||| ||||| ||||||| |||||||| ||||| | ||| Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1235 CAGATCTGGAACATTAGAACACATTTGTGAAGTCCCAGTGCTTTCCGCAGTTTGTGGTTG 1294 | ||||| ||| | || | | ||||||||| |||| | |||| ||| ||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1295 AACATTACATGCATTTTGATTATGTCG 1321 || | || |||| |||||||||| Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8604901975420