Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_011135.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq19028 233 3e-58 >seq19028 Length=31091 Score = 233 bits (258), Expect = 3e-58 Identities = 294/400 (74%), Gaps = 3/400 (1%) Strand=Plus/Plus Query 1622 GCATTCTTTAATGCCCAGTTTTTTAGTGCAGAATTCTTATCTTCATCCAAGAACTCTTTA 1681 ||||| | || | ||| ||||||| | | ||| || || || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1682 TAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGA 1741 ||||||||| | || || |||||||| | |||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1742 ACTGGCTTCCCGTACTTTGTATTTGATTG-CCAGTCCCTTTGGGCCCCCATGAATTCTTT 1800 || ||| | ||||| ||| || | | | ||| | |||||||||||||| || ||||| Sbjct 13915 ACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTT 13973 Query 1801 AAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAGGCATCATTACT 1860 ||||||||||||||| || || || |||| |||||||| |||||||||||||| ||| Sbjct 13974 AAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGA 14033 Query 1861 GTAGACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTATGTGGTCCCAGTGATCT 1920 || | || | | | ||||||||||| || || |||||||||||||| | ||||| Sbjct 14034 ATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCT 14093 Query 1921 GGCCCACATAGTCTTTCCCGTACTACTATCACCCCTCATGACTATACTTACAGGTC-TCA 1979 |||||| ||||| || || ||| |||||| ||||| ||||| |||| | | Sbjct 14094 TGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTA 14153 Query 1980 AAGGCCGCGCAGCGGCACTGACGACGTTCTCAGCAGCCCA 2019 | ||||||||||||||| || || ||||| ||||| Sbjct 14154 ATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCA 14193 Score = 123 bits (136), Expect = 4e-25 Identities = 249/367 (68%), Gaps = 12/367 (3%) Strand=Plus/Plus Query 963 GAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAATTCTGT 1022 || |||| |||| ||||| ||| |||||||| | |||||||| |||||| |||| Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1023 GTACGCTACGCTGAAGATACGTATCTACTTCTATGATTCTGTAACAAACTGAATTAATAA 1082 || ||| ||| | ||| | || || ||||| |||| |||| ||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAA-----TTAATAA 13191 Query 1083 AGATTGTATTTTATTGAATATGATTGGTCTACATATACAATGTGGTGTAATACATTCCAT 1142 | |||| |||||||| || ||| ||||| || | || | | |||||| || Sbjct 13192 ATATTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAAT 13251 Query 1143 AATACATGATCAACAGCTCTAATTACATTGTTAATACTGATGACTCCTAAATTATTTAAA 1202 ||||||| || ||||||||||| | |||||||||||| || || ||||| | |||| Sbjct 13252 AATACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAA 13311 Query 1203 TATTT--ATACACTTGGGTCTTAAAGACTCTTAAGAAACGACCAGTCTGAGGCTGTGAGG 1260 |||| ||||| | ||||| |||||||||||| ||| |||| || | Sbjct 13312 AATTTCATTACAC--GAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAAC 13369 Query 1261 TCATCCAGATTCGGAAGACTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGT 1320 ||| ||| |||| |||||| |||||| | || | ||||||||||||| Sbjct 13370 GAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGT 13429 Query 1321 GATTGAA 1327 | ||||| Sbjct 13430 GGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8739161063740