Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_011346.1 Length=2776 Score E Sequences producing significant alignments: (Bits) Value seq19028 262 7e-67 >seq19028 Length=31091 Score = 262 bits (290), Expect = 7e-67 Identities = 314/423 (74%), Gaps = 5/423 (1%) Strand=Plus/Plus Query 1577 GAAGAGTGGCTCTGTGAGGGAGACGAATTCTGCATTCTTTAATGCCCAATTCTTGAGGGC 1636 ||| | ||| | ||||| || | |||||||||||| | || | |||||| || | Sbjct 13764 GAATAATGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTT 13823 Query 1637 TGTTTGTTTTTCCTCGTTTAAAAACTCGATGTAGCTGGAGCCTGGACCTGGATTGCAGAG 1696 | | ||||||||| | | ||||| | |||||||| ||||| |||||||| | Sbjct 13824 AATATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAA 13883 Query 1697 AAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTG 1756 ||||| || || |||||||| || || | || ||| ||||||||||| ||||| Sbjct 13884 GAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGA 13943 Query 1757 CCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTCAGATAATGCGGATCAACGTC 1816 ||| | |||||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct 13944 CCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTT 14003 Query 1817 ATCAATGACGTTGTACCACGCGTCGTTGCTGTAAACCTTGGGACTCAAGTCTAGGTGACC 1876 |||||||| ||| ||||| || | || |||| || | |||| |||| ||||| Sbjct 14004 ATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACC 14063 Query 1877 ACATAAATAATTGTGTGGTCCAAGAGATCTGGCCCACACTGTCTTCCCTGTAC--GACTA 1934 |||| ||||| |||||||| | |||||| |||||| ||||||||||||| | |||| Sbjct 14064 GCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACT- 14122 Query 1935 ACGCCCTCGATAACAATTGATTTAGGTC-TCAATGGCCGCGCAGCGGCACTCTTCACATT 1993 | ||||| || ||||| || |||| | |||||||||||||||||| | | ||||| Sbjct 14123 -CACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATT 14181 Query 1994 TTC 1996 ||| Sbjct 14182 TTC 14184 Score = 163 bits (180), Expect = 5e-37 Identities = 271/387 (70%), Gaps = 7/387 (2%) Strand=Plus/Plus Query 951 GAATCATACGGAGAATGCTTTGTTGTTGTATATGGCATGTACACATGCATCTAATCCCGT 1010 || |||||| || ||||| |||| ||||||| | || |||||||||||||| || Sbjct 13080 GACTCATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1011 GTATGCTACGTTGAAAATACGTATCTATTTCTACGACTCTGTATCAAATTAATAAACATT 1070 ||| ||| ||| || ||| | ||||| || || ||||||||||||||||| ||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1071 GAATTTTATTGAGTGTTTTTCGATTACATCCAAAGTACCTGCAATTACATTATTTAGTAC 1130 |||||||||| || | ||| | |||||||| || |||||||||| || ||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1131 ATGCGTGACTGTTCTAATTACATTGTTGATCGAAATAACACCTAAATTATTCAAGTACTT 1190 || || | |||||| | |||||| || |||||||||| ||| || | | || Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCT-AATCGGTCTAAAAATT 13315 Query 1191 GCA--ACATTCATTCTTAAAGACCCTTAAAAATCTCCCAGTCGGCGGAGTCAAACGTGTC 1248 || ||| | | ||||| || ||||| || ||||| ||| ||||| ||| Sbjct 13316 TCATTACACGAAAT-TTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1249 CAGATTCGAAAGGAGAGGAAACATTTGTGAAGTCCCAGTGCTTTCCTCAGGTTGTGGTTG 1308 | ||| ||| ||||||| ||||||||| |||| | |||||||||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1309 AATTGTATCTGGACGGTGATAATGTCG 1335 ||| | || || | ||| |||||| Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8767950393745