Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_011804.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq19028 217 3e-53 >seq19028 Length=31091 Score = 217 bits (240), Expect = 3e-53 Identities = 463/682 (68%), Gaps = 27/682 (4%) Strand=Plus/Plus Query 1637 TTCCTCGTCTAGGAACTCTTTATAACTGCTGTGGGGACCAGGATTGCAGAGGAAGATTGT 1696 |||||| || |||||||||||||| ||| |||||||||||||| | ||||||||| Sbjct 13833 TTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGT 13892 Query 1697 TGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTT---GTGTTGGATTGCCAGTC 1753 |||||||| || || || | || ||| | ||||| ||| || |||| ||| | Sbjct 13893 CGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGA---CCAATT 13949 Query 1754 CCTTTGGGCCCCCATAAACTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAAT 1813 ||||||||||||||||||||||||||||| || || ||||||| ||||||| |||||| Sbjct 13950 GCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAAT 14009 Query 1814 GACGTTATACCAGGCGTCGTTACTGTAGACCTTGGGACTCAGGTCCAGATGTCCACACAA 1873 || |||||||||||| | || || | || | ||| || | ||| || || | Sbjct 14010 GATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAG 14069 Query 1874 ATAGTTATGTGGTCCCAGTGATCTAGCCCACATCGTCTTCCCCGTACGACTGTCTCCTTC 1933 || ||||||||||| | ||||| |||||| |||||||| || | | || || || Sbjct 14070 GTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTC 14129 Query 1934 AATTACTATACTTCGCGGTC-TAAGGGGCCGCGCAGCGGGATCGACAACGTTATCGATGG 1992 ||| || ||||| |||| | | ||||||||||||| ||| ||| || || | Sbjct 14130 AATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTG 14189 Query 1993 CCCAAACTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAACGAGAAAAAGGAGAAATAT 2052 |||| |||| ||| | || ||||||| | ||||||| || || Sbjct 14190 CCCAGCACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACAT 14235 Query 2053 AGGGAGCCGGTGGCTCCTGAAAGATCTTGCTCTGA-TTTGCATTTAAATTATGAAATTGT 2111 | || | || || | || || | | ||| | |||| | || ||||||| |||| Sbjct 14236 AAGGTTCAGGAGGGGGCATGAATAT-TCGATCTAATTTTGGAACTATATTATGATATTGA 14294 Query 2112 AGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTC-TGACTTACTGCC 2170 | || ||| | | || | ||| |||| | ||| || || | | || || Sbjct 14295 AATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATG-T 14353 Query 2171 TGCGTTAAGTGCTGCGGCGTAAGCGTCGTTTGCTGTCTGTTGTCCTCCTCTTGCTGATCT 2230 || | | ||| | || | | || |||| ||| ||| |||||||| || |||| Sbjct 14354 AGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCG 14413 Query 2231 TCCATCGATCTGAAACTCTCCCCATTCGAGAGT-GTCCCCGTCCTTGTCGATGTAGTCCT 2289 ||||||||| ||||| | ||||| ||| | || || | ||| || ||||||| | || Sbjct 14414 TCCATCGATTTGAAAATTGCCCCAGTCG-GTGTAATCACAGTCTTTCGCGATGTATTTCT 14472 Query 2290 TGACATCTGAGCTTGATTTAGC 2311 | |||||||| ||||||||| Sbjct 14473 TAACATCTGAAGATGATTTAGC 14494 Score = 80.6 bits (88), Expect = 5e-12 Identities = 236/359 (66%), Gaps = 10/359 (3%) Strand=Plus/Plus Query 1023 TTATTTTTATGACTATGTAGCGAACTAATATTAATAAAGTTTGAATTTTATATCTGAATA 1082 |||||||||||| |||| | || ||||| |||| ||||||||||| || ||| Sbjct 13161 TTATTTTTATGAGAGTGTATCAAATTAATA--AATA----TTGAATTTTATTTCATGATA 13214 Query 1083 TTGGTCTACATACATTGTTTGATTAATTACATTGTACAATACATGTTCAACGGCTTTAAT 1142 || ||||| || |||||| | |||||||||| | ||||||| || || ||| |||| Sbjct 13215 TTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTGTCTACAGCTCTAAT 13274 Query 1143 AACTAAATTAAGTGAGATTACACCTAGATTGTTGAGATACTTGAGGACTTGGGTTTTGAA 1202 || |||| || ||||||| || | | | || | || | ||| || Sbjct 13275 AATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATTACACGAAATTTAAA 13334 Query 1203 TACCCTTAAGAAAAGACCACTCGGAGGGTGTAAGGCCGTCCAGATTCGGAAGGTTAGAAA 1262 ||| |||||||||| ||||||| |||| |||| ||| |||| | || || Sbjct 13335 TACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGATCTTGAAGTTGAGGAA 13394 Query 1263 ACACTTGTGTATTCCCAGAGCTTTCCGTAGGTTGTAGTCGAAATGGATCCTGAGTGTTC- 1321 | ||||| | ||| | |||| ||||||| || | ||| || || | ||| Sbjct 13395 AGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG-AATCGAATTTGTAT-TTCG 13452 Query 1322 -TTATGTCCATGTTCGTCCTGAATGGACGGTTGTCGTGGTTGAGGATTTTGAAATAGAG 1379 ||||||| | ||| | ||| | | | |||||||||||| |||||||| || Sbjct 13453 ATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTGGTTGAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8656083548508