Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_011805.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq19028 369 6e-99 >seq19028 Length=31091 Score = 369 bits (408), Expect = 6e-99 Identities = 660/959 (69%), Gaps = 25/959 (3%) Strand=Plus/Plus Query 1616 CCAGTTTTTTAGTGCGGTGTTCTTTTCCTCGTCTAGGAATTCTTTATAACTGCCAGTGGG 1675 ||| ||||||| | | || |||||||| || ||||| |||||||| ||| ||| || Sbjct 13809 CCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGG 13868 Query 1676 ACCAGGATTGCATAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTA 1735 |||||||||||| | ||||||||| ||||| || || || || | || ||| | ||||| Sbjct 13869 ACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTA 13928 Query 1736 CTTT---GTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAG 1792 ||| || |||| ||| | |||||||||||||| |||||||||||||| || || Sbjct 13929 TTTTACCTTGCTGGA---CCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAG 13985 Query 1793 GAAATGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACCTTGGG 1852 ||||||| ||||||| |||||||| |||||||||||| | || || | || Sbjct 13986 ATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATT 14045 Query 1853 ACTCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAATGACCTAGCCCACATCGT 1912 | ||| || | ||| || || | || ||||||||||| || || || |||||| || Sbjct 14046 ATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGT 14105 Query 1913 CTTCCCCGTACGACTATCTCCCTCAATTACTATACTTCGAGGTC-TAAGGGGCCGCGCAG 1971 |||||| || | | || |||||||| || ||||| |||| | | |||||||||| Sbjct 14106 CTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAG 14165 Query 1972 CGGGATCGACAACGTTATCGATGGCCCAAACTTCAAGTTCTTCTGGAACTTGATCAAAAG 2031 ||| ||| ||| || || ||||| |||| | | |||| || | || Sbjct 14166 CGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAATTGTTGAAGGAA---GA--ACAAC 14220 Query 2032 AAGAAGGNNNNNNNNNNNNNNCATAAACCTCCACAGGAGGTGTAAAAATCCTATCTAAAT 2091 | |||| ||||| || ||| || | || || | |||||| | Sbjct 14221 TAAAAGG---------ACTAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATT 14271 Query 2092 TACACTTTAAATTGTGGTATTGAAAAATATAGTCTTTCGGGAGTTTTTCCCTTATAATTG 2151 | || ||| || |||||||| | | | | | || | |||||| || ||||| | Sbjct 14272 TTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAG 14331 Query 2152 CTAAAGCTGCTTCAGCTGAACCTGCATTCAGGGCCTCTGCTGCTGCATCATTAGCTGTCT 2211 | ||| ||||| ||| ||| | | || ||||| | | ||||||| | ||| | Sbjct 14332 AAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTAT 14391 Query 2212 GTTGACCTCCTCTAGCAGATCTTCCGTCGACCTGAAACTGACCCCAGTCGATGTAATCAT 2271 || ||||||||||||||||| ||| |||| ||||| | ||||||||| |||||||| Sbjct 14392 GTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCAC 14451 Query 2272 CGTCCTTCTCGATGTAGGATTTGACATCGGAACTGGACTTAGCTCCCTGGAAGTTTGGAT 2331 ||| ||| ||||||| || ||||| ||| || ||||| ||||||||||| | Sbjct 14452 AGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGT 14511 Query 2332 GGAATTGGGTGGAGTTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTTGG 2391 || || |||| ||||||| || ||| |||||| ||||| |||||||| || | | Sbjct 14512 GGTATGTGGTGCTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTG 14571 Query 2392 CTTTACCTTTGAACTGGATGAGGGCGTGGATATGCAGAGACCCATCTTGGTGTTTCTCTT 2451 | || |||| ||| || || ||||| ||| |||| | |||||| |||||||| |||| Sbjct 14572 CCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTT 14631 Query 2452 GTGCTACTCTGATAAATAATTTATCAGATGGGCAATTTA-TTGAACGAAGATTGTCGAGC 2510 | ||||| ||| | ||||| || || ||| | || ||| | || | Sbjct 14632 GACAGACTCT--AAAACAGTTTATTTGAAGGACAAGAAACCTGTTTCAAG-TGCTCTAAG 14688 Query 2511 ATTTGCTCTTTGGGTATTGGGCATTTTGGATAAGTAAGGAAGATATTTTTGGCATTTAC 2569 ||||| ||||| || | || ||||||||| | ||||| || || ||||| | |||||| Sbjct 14689 ATTTGATCTTTAGGAAGAGGACATTTTGGAAATGTAAGAAATATGTTTTTAGAATTTAC 14747 Score = 107 bits (118), Expect = 3e-20 Identities = 248/368 (67%), Gaps = 13/368 (4%) Strand=Plus/Plus Query 942 GAATCATACCGAAAATGCGTTAATGCTTTATATGGCTTGTACTCACGCTAGCAACCCTGT 1001 || |||||| |||||||| || || ||||| || ||||| || || ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTTG---TATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1002 TTATGCTACGTTGAAGATCAGG-ATATATTTCTATGACTCTGTAACGCACTGATATTAAT 1060 ||| ||| ||| || || | | ||||| ||||| |||| | | |||||| Sbjct 13137 ATATTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATC------AAATTAAT 13189 Query 1061 AAAGTTTGAATTTTATTTCTGAATATTGATCTACATACATCGTTTGTTGGATTACATTGT 1120 ||| |||||||||||||| ||||| | ||||| || ||||| | ||||||||| Sbjct 13190 AAATATTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGA 13249 Query 1121 ACAATACATGTTCTACAGCTTTAATAACTAAATTAATTGAAATTACACCGAGATTGTTC- 1179 | ||||||| ||||||||| |||||| ||||| ||| ||||| | || | || Sbjct 13250 ATAATACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTA-ATCGGTCT 13308 Query 1180 AAATATTTGAGGACTTGGGTTTTGAATACCCTTAAGAAAAGACCAGTCTGAGGGTGTAAG 1239 ||| |||| | || | ||| ||||| |||||||||| ||| |||| |||| Sbjct 13309 AAAAATTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAA 13368 Query 1240 GTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCAGTCCCAGAGCTTTCCGAGTGTTG 1299 |||| ||| |||| | || ||| ||||| || ||| | |||| |||| Sbjct 13369 CGAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTG 13428 Query 1300 TAGTTGAA 1307 | |||||| Sbjct 13429 TGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8646487003554