Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_012206.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq19028 289 5e-75 >seq19028 Length=31091 Score = 289 bits (320), Expect = 5e-75 Identities = 496/714 (69%), Gaps = 22/714 (3%) Strand=Plus/Plus Query 1687 ATTCTTTTCCTCGTCTAGATACTCTTTATATGATGATGTTGGACCTGGATTGCAGAGGAA 1746 ||| |||||||| || || |||||||||| || || ||||| |||||||| | ||| Sbjct 13827 ATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAA 13886 Query 1747 GATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCA 1806 ||| || || || ||||| || || | | ||| | ||||| || ||||| ||| Sbjct 13887 GATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCA 13946 Query 1807 GTCTCTTTGGGCCCCCATAAATTCTTTGAAGTGTTTGAGGTAATGGGGATCGACGTCATC 1866 | ||||||||||||||||| ||||| ||||| || || ||||| |||||||||| ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1867 AATGACGTTATACCAAGCATCATTTGAATACACCTTTGGGCTAAGATCAAGATGCCCACA 1926 ||||| ||||||||| |||| ||||||||| | || | | ||| | ||| || || Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1927 CAAGTAATTGTGTGGACCTAATGACCTAGCCCACATCGTCTTGCCGGTACGACTATCACC 1986 | |||||| ||||| ||||| || || |||||| ||||| || || | | ||||| Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1987 CTCAATAACAATACTATTCGGTC-TCCATGGCCGCGCAGCGGCATCGCTCACATTCTCAG 2045 |||||| |||||||| || |||| | ||||||||||||||||||| || ||||| |||| Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Query 2046 AGACCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAACATAAAAAAGGAGAAA 2105 |||| |||| ||| || || |||||||| ||||||| || Sbjct 14187 CTGCCCAGCACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAA 14232 Query 2106 CATAAGGAGCCGGAGGCTCCTGAAAAATTCTATCTAAATTATTATTTAAATTATGAAATT 2165 ||||||| | ||||| | || |||| |||||| || | || ||||||| ||| Sbjct 14233 CATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATT 14292 Query 2166 GTAATACAAAATCTTTG--GGAGCTAATTCCCGTATAACCCTAAGAGCCTCTGCCTTACT 2223 | |||| ||| ||||| || | ||| | |||| ||| || ||| | | Sbjct 14293 GAAATAGAAA--CTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGA 14350 Query 2224 TCCTGCGTTAAGCGCTGCGGCGTAAGCGTCATTGGCTGTCTGTTGCCCTCCTCTTGCAGA 2283 | || | | |||| | || | | ||||| | ||| ||| |||||||| ||||| Sbjct 14351 TGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGA 14410 Query 2284 TCTCCCATCGATCTGGAACTCTCCCCATTCGAGTGT-ATCTCCATCCTTGTCGATGTAGG 2342 || |||||||| || || | ||||| ||| |||| ||| | || || ||||||| Sbjct 14411 TCGTCCATCGATTTGAAAATTGCCCCAGTCG-GTGTAATCACAGTCTTTCGCGATGTATT 14469 Query 2343 ACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTG 2396 ||| || || || |||||||| || | |||||| ||| ||||| || Sbjct 14470 TCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTG 14522 Score = 215 bits (238), Expect = 9e-53 Identities = 383/556 (69%), Gaps = 27/556 (5%) Strand=Plus/Plus Query 1002 CATACTGAGAATGCTTTGTTGTTGTATATGGCTTGTACTCATGCCTCTAATCCAGTGTAT 1061 |||||||| ||||| |||| ||||||| || |||||||| |||||||| || ||| Sbjct 13084 CATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1062 GCTACTCTGAAAATACGCATCTATTTCTACGATGCAGTTACGAATTAATAAATATTAAAT 1121 |||| ||| || ||||| ||||| || || || | |||||||||||||| ||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1122 TTTATTTCATGTGTTTCGACAACGTCGATTGTATTTACAAGAACGTTATACAGTACATGA 1181 ||||||||||| ||| | || || | ||| | ||| || || | | ||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTG 13260 Query 1182 TCAACAGCTCTAATAATTGTATTAATTGAAATTACACCCAAATTATCTAAATACTTTAAC 1241 || |||||||||||||| | ||||| ||| ||||| || |||||| | || | Sbjct 13261 TCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATT 13320 Query 1242 ACTTGAACCCTAAATACCCTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAGACT 1301 || ||| ||||||| ||||||||| ||| |||| ||||| | |||| || Sbjct 13321 ACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGATC 13380 Query 1302 TTGAAGTTCAGAAAACACTTGTGAATCCCCAACGCCTTCCGCAGGTTGTGGTTGAACCTG 1361 |||||||| || ||| ||||||| || |||||| ||||||||||||||| | Sbjct 13381 TTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCGA 13440 Query 1362 ATTTGTACTGTGATTATGTCGTGTTG--GTAGTTGAACGGTCTCTCGTCGTGGTTGGTTA 1419 ||||||| | |||||||||| |||| | | ||| ||||| | ||||||| | Sbjct 13441 ATTTGTATTTCGATTATGTCG-GTTGTCGAATTTG-TTGGTCTGAGATTGTGGTTGAGGA 13498 Query 1420 TCTTGAAATACAG-GGGATTTTGTATCTCCCAGATA------------AAA-------AC 1459 |||||||||| || | | ||| ||||| ||| ||| || Sbjct 13499 TCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTAGAC 13558 Query 1460 GCCATTCCGAGCTTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTACTGC 1519 ||||||| ||||| || ||||||||| ||||||||||||| ||||||| | | Sbjct 13559 GCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGACCAGAAC 13618 Query 1520 AGTTAATATGTATGAA 1535 || |||||| | |||| Sbjct 13619 AGCTAATATTTTTGAA 13634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8793540909305