Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_012481.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq19028 132 8e-28 >seq19028 Length=31091 Score = 132 bits (146), Expect = 8e-28 Identities = 239/342 (70%), Gaps = 13/342 (4%) Strand=Plus/Plus Query 1534 CCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTAC 1593 || |||||||||| | ||||| ||||| ||||| || || | || ||| | ||||| Sbjct 13870 CCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTAT 13929 Query 1594 TTACAGTTTGATTG-CCAGTCCCTTTGGGCCCCTATGAGCTCTTTCCAGTGCTTTAGCTT 1652 || | ||| | | ||| | ||||||||||| || | |||||| |||||||||| Sbjct 13930 TTT-ACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAG--- 13985 Query 1653 TAAATAATGCGGAGCTATGTCATCAATGACGTTATACTCCACATCATTCGAGAAGACCTT 1712 |||||||||| | | || |||||||| ||||||| ||| ||| || | | || Sbjct 13986 ---ATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTT 14042 Query 1713 GGAATTGAAGTCGAGGTGACCACTCAAATAATTATGTGGGCCTAAAGCACGTGCCCACAT 1772 ||| || || | ||||| | | ||||||||||| ||||||| | ||||||| Sbjct 14043 ATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTC 14102 Query 1773 GGTTTTGCCTGTTCGTGAACCTCCTTCAATTATGATACTAATAGGTC-TCTCCGGCCGCG 1831 || || ||||||| || | || ||||| | ||||| | |||| | ||||||| Sbjct 14103 TGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCG 14162 Query 1832 CAGCGGAACTCCGACCAAAATATTCATATGCCCATGAACTCA 1873 |||||| | ||| | || || |||| |||||| | ||||| Sbjct 14163 CAGCGGCA-TCC--CTAACATTTTCAGCTGCCCA-GCACTCA 14200 Score = 107 bits (118), Expect = 3e-20 Identities = 184/267 (69%), Gaps = 25/267 (9%) Strand=Plus/Plus Query 820 GAATCATACGGAGAACGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGT 879 || |||||| || || || ||||| |||||| | |||||||| ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 880 GTATGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAATTTT 939 ||| || ||| || || | ||||||||||| || ||||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 940 GAATTTTATTTCATGATTCTCGAGTACATC-----TT-------TTACAT--AATGTTTG 985 ||||||||||||||||| || |||||||| || |||||| ||| | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 986 TTCGTCGCGAAACGAACAGCACTAATTACATTGTTTATTCCAATAACGCCTATGCTATCT 1045 | ||| ||||| ||||| | |||||| || | |||||| |||| | ||| Sbjct 13257 ATTGTC--------TACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCT 13308 Query 1046 AAATAAGACATTACAAGTAATTTAAAT 1072 ||| | ||||||| | ||||||||| Sbjct 13309 AAAAATTTCATTACACGAAATTTAAAT 13335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8198648239034